plotRDA: Plot RDA results

In isglobal-brge/MEAL: Perform methylation analysis and facilitates differential expression analyses

Description

Plot RDA results

Usage

plotRDA(object, pheno = data.frame(), n_feat = 5, main = "RDA plot", alpha = 1)

Arguments

object	ResultSet
pheno	data.frame with the variables used to color the samples.
n_feat	Numeric with the number of cpgs to be highlighted. Default: 5.
main	Character with the plot title.
alpha	Numeric with the alpha level for colour transparance. Default: 1; no transparency.

Value

A plot is generated on the current graphics device.

Examples

if (require(minfiData)){
set <- ratioConvert(mapToGenome(MsetEx[1:10,]))
model <- model.matrix(~set$sex)
rda <- runRDA(set, model)
plotRDA(rda, pheno = data.frame(factor(set$sex)))
}

isglobal-brge/MEAL documentation built on May 8, 2021, 8:05 p.m.