This package carries out most common analysis when performing whole genome association studies. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of HardyWeinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Maxstatistic and genetic riskallele score exact distributions are also possible to be estimated.
Package details 


Author  Juan R Gonzalez and Victor Moreno 
Maintainer  Juan R Gonzalez <[email protected]> 
License  file LICENSE 
Version  1.98 
URL  http://brge.isglobal.org 
Package repository  View on GitHub 
Installation 
Install the latest version of this package by entering the following in R:

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