isglobal-brge/SNPassoc: SNPs-based whole genome association studies

This package carries out most common analysis when performing whole genome association studies. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Max-statistic and genetic risk-allele score exact distributions are also possible to be estimated.

Getting started

Package details

AuthorJuan R Gonzalez and Victor Moreno
MaintainerJuan R Gonzalez <[email protected]>
Licensefile LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
isglobal-brge/SNPassoc documentation built on April 7, 2018, 1:11 p.m.