This function prepares the CRITICAL element corresponding to matrix of genotypes necessary to be included in 'haplo.glm' function.
an object of class 'setupSNP' containing the the SNPs that will be used to estimate the haplotypes.
a vector indicating the names of SNPs that are used to estimate the haplotypes
the same as 'setupGeno' function, from 'haplo.stats' library, returns
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