fit.gam: Function to fit gam to a data.frame or an expressionSet

In isglobal-brge/nlOmicAssoc: non-linar omic association

Description

GAM models are fitted for each row in data using lm and backfitting using bruto function in mda package.

Usage

fit.gam(data = data_m, vars_df = vars_df, df = 4L, cores = 1L,
  verbose = FALSE, ...)

Arguments

data	ExpressionSet or data.frame with samples as columns and observations as rows could be an ExpressionSet(modif!)
vars_df	data.frame with sampes as rows and variables as columns
df	degrees of freedom to apply to model
cores	cores in case of parallelization (no windows)
verbose	logical to verbose (comment) the steps of the function, default(FALSE)

isglobal-brge/nlOmicAssoc documentation built on May 9, 2019, 8:16 a.m.