fit.rforest: Function to fit rforest to a data.frame or an expressionSet

Description Usage Arguments

Description

Random forest models are fitted for each row in data using package randomForest

Usage

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fit.rforest(data = data_m, vars_df = vars_df, seed = NULL,
  maxnodes = 15L, ntree = 2000, cores = 1L, verbose = FALSE, ...)

Arguments

data

ExpressionSet or data.frame with samples as columns and observations as rows could be an ExpressionSet(modif!)

vars_df

data.frame with sampes as rows and variables as columns

seed

set a see, for reproducibility

maxnodes

maximum number of terminal nodes trees in the forest can have

ntree

number of trees to grow

cores

cores in case of parallelization (no windows)

verbose

logical to verbose (comment) the steps of the function, default(FALSE)

df

degrees of freedom to apply to model


isglobal-brge/nlOmicAssoc documentation built on May 9, 2019, 8:16 a.m.