inst/scripts/createGenomicRanges.R
In isglobal-brge/scoreInvHap: Get inversion status in predefined regions
library(GenomicRanges)
a <- read.csv2("~/../Desktop/Libro1.csv", as.is = TRUE)
colnames(a)[c(1, 4:6)] <- c("scoreInvHap.name", "Inv.freq", "Haplotypes", "Num.SNPs")
a[, "Inv.freq"] <- as.numeric(a[, "Inv.freq"])
inversionGR <- GRanges(gsub(",", "", a$Coordinates))
mcols(inversionGR) <- a[, -3]
names(inversionGR) <- a[, 1]
devtools::use_data(inversionGR)
isglobal-brge/scoreInvHap documentation built on Feb. 7, 2021, 8:43 a.m.
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library(GenomicRanges)
a <- read.csv2("~/../Desktop/Libro1.csv", as.is = TRUE)
colnames(a)[c(1, 4:6)] <- c("scoreInvHap.name", "Inv.freq", "Haplotypes", "Num.SNPs")
a[, "Inv.freq"] <- as.numeric(a[, "Inv.freq"])
inversionGR <- GRanges(gsub(",", "", a$Coordinates))
mcols(inversionGR) <- a[, -3]
names(inversionGR) <- a[, 1]
devtools::use_data(inversionGR)
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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