counts2fpkm_htseq: From counts to fpkm and quartiles with htseq files

In itamuria/immunoeasy: Make Immuno Therapies An Easier Process

From counts to fpkm and quartiles with htseq files

Description

From counts to fpkm and quartiles with htseq files

Usage

counts2fpkm_htseq(filename, mfl_num = 200)

Arguments

filename	The name of the file with htseq counts
mfl_num	meanFragmentLength. A numeric vector with mean fragment lengths, which can be calculated using ’CollectInsertSizeMetrics(Picard)’ tool. The length of items should be as the same of columns in read count matrix.

Value

data frame with fpkm and quartiles

Examples

## Not run: 
counts2fpkm_htseq (filename, mfl_num = c(mfl_number))

## End(Not run)

itamuria/immunoeasy documentation built on Sept. 30, 2022, 5:53 a.m.