counts2fpkm_quant: From counts to fpkm and quartiles with Quant3 files

In itamuria/immunoeasy: Make Immuno Therapies An Easier Process

From counts to fpkm and quartiles with Quant3 files

Description

From counts to fpkm and quartiles with Quant3 files

Usage

counts2fpkm_quant(filename, mfl_num = c(mfl_number))

Arguments

filename	The name of the file with Quant3 counts
mfl_num	meanFragmentLength. A numeric vector with mean fragment lengths, which can be calculated using ’CollectInsertSizeMetrics(Picard)’ tool. The length of items should be as the same of columns in read count matrix.

Value

data frame with fpkm and quartiles

Examples

## Not run: 
counts2fpkm_quant (filename, mfl_num = c(mfl_number))

## End(Not run)

itamuria/immunoeasy documentation built on Sept. 30, 2022, 5:53 a.m.