Files in ivabudimir/meNet
Correlation-based network analysis of methylation data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/CpG_in_CGI.R
R/RcppExports.R
R/boxed_heatmap.R
R/cor_permutationTest.R
R/cor_resamplingStats.R
R/data.R
R/find_CpG.R
R/meMultiplex.R
R/meMultiplex_communities.R
R/meMultiplex_to_multinet.R
R/meNet_CGI.R
R/meNet_cor.R
R/meNet_gene.R
R/meNet_singleCGI.R
R/meNet_singleGene.R
R/normalization_functions.R
R/plotCI_meCGI.R
R/plotCI_meCpG.R
R/plot_multiplex.R
R/read_infomap_communities.R
R/sort_functions.R
R/utils.R
README.Rmd
README.md
data/Bacalini_betaValues.rda
data/Bacalini_sampleSheet.rda
data/CpG_annoHM450K.rda
data/CpG_genes.rda
data/Johansson_residuals.rda
data/N_ranges.rda
data/UCSC_CGI.rda
data/UCSC_genes.rda
docs/404.html
docs/LICENSE-text.html
docs/_config.yml
docs/articles/index.html
docs/articles/meMultiplex.html
docs/articles/meMultiplex_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/methylation-multiplex.html
docs/articles/methylation-multiplex_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/methylation-plots.html
docs/articles/methylation-plots_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/methylation-plots_files/figure-html/unnamed-chunk-3-1.png
docs/articles/plots/trial.png
docs/articles/resampling-methods.html
docs/articles/resampling-methods_files/accessible-code-block-0.0.1/empty-anchor.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Bacalini_betaValues.html
docs/reference/Bacalini_sampleSheet.html
docs/reference/CpG_anno450K.html
docs/reference/CpG_annoHM450K.html
docs/reference/CpG_genes.html
docs/reference/CpG_in_CGI.html
docs/reference/Johansson_residuals.html
docs/reference/N_ranges.html
docs/reference/Rplot001.png
docs/reference/UCSC_CGI.html
docs/reference/UCSC_genes.html
docs/reference/boxed_heatmap.html
docs/reference/coord_sort.html
docs/reference/cor_permutationTest.html
docs/reference/cor_resamplingStats.html
docs/reference/find_CpG.html
docs/reference/index.html
docs/reference/max_normalization.html
docs/reference/meMultiplex.html
docs/reference/meMultiplex_communities.html
docs/reference/meMultiplex_to_multinet.html
docs/reference/meNet_CGI.html
docs/reference/meNet_cor.html
docs/reference/meNet_gene.html
docs/reference/meNet_singleCGI.html
docs/reference/meNet_singleGene.html
docs/reference/neg_max_normalization.html
docs/reference/plotCI_meCGI.html
docs/reference/plotCI_meCpG.html
docs/reference/plot_multiplex.html
docs/reference/read_infomap_communities.html
index.md
inst/REFERENCES.bib
man/Bacalini_betaValues.Rd
man/Bacalini_sampleSheet.Rd
man/CpG_annoHM450K.Rd
man/CpG_genes.Rd
man/CpG_in_CGI.Rd
man/Johansson_residuals.Rd
man/N_ranges.Rd
man/UCSC_CGI.Rd
man/UCSC_genes.Rd
man/boxed_heatmap.Rd
man/coord_sort.Rd
man/cor_permutationTest.Rd
man/cor_resamplingStats.Rd
man/find_CpG.Rd
man/max_normalization.Rd
man/meMultiplex.Rd
man/meMultiplex_communities.Rd
man/meMultiplex_to_multinet.Rd
man/meNet_CGI.Rd
man/meNet_cor.Rd
man/meNet_gene.Rd
man/meNet_singleCGI.Rd
man/meNet_singleGene.Rd
man/neg_max_normalization.Rd
man/plotCI_meCGI.Rd
man/plotCI_meCpG.Rd
man/plot_multiplex.Rd
man/read_infomap_communities.Rd
pkgdown/_pkgdown.yml
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/resampling_cor.cpp
vignettes/.gitignore
vignettes/methylation-multiplex.Rmd
vignettes/methylation-plots.Rmd
vignettes/resampling-methods.Rmd
