find_CpG: CpG coordinates on a chromosome
In ivabudimir/meNet: Correlation-based network analysis of methylation data

Description Usage Arguments Details Value References

For a given chromosome, returns positions of all "CG" dinucleotides (CpG sites) based on a human genome assembly hg19. If minimum or maximum position is given, only CpGs in the given range are returned.

1	find_CpG(chromosome, min_coord = NULL, max_coord = NULL)

`chromosome`	Name of a human chromosome in the format '"chr?"', where '"?"' must either be a number from '1' to '22' or '"X"' or '"Y"'.
`min_coord`	Minimum returned coordinate.
`max_coord`	Maximum returned coordinate.

Returned position is a position of "C". The same convention is used by Illumina Infinium HM450K manifest file. Function is based on R package '"BSgenome.Hsapiens.UCSC.hg19"' \insertCiteteam2020bsgenomemeNet.

Vector of CpG coordinates.

\insertAllCited

ivabudimir/meNet documentation built on Dec. 20, 2021, 8:03 p.m.