Files in jaime11/Transcription-Factor-Footprinting
ATAC-seq Quality Control
DESCRIPTION
NAMESPACE
NEWS.md
R/ATACseqQC.R
R/enrichedFragments.R
R/factorFootprints.R
R/fragSizeDist.R
R/plotFootprints.R
R/pwmscores.R
R/readBamFile.R
R/shiftGAlignmentsList.R
R/shiftReads.R
R/splitBam.R
R/splitGAlignmentsByCut.R
R/writeListOfGAlignments.R
README.md
inst/extdata/GL1.bam
inst/extdata/GL1.bam.bai
inst/extdata/splited/NucleosomeFree.bam
inst/extdata/splited/NucleosomeFree.bam.bai
inst/extdata/splited/dinucleosome.bam
inst/extdata/splited/dinucleosome.bam.bai
inst/extdata/splited/mononucleosome.bam
inst/extdata/splited/mononucleosome.bam.bai
inst/extdata/splited/trinucleosome.bam
inst/extdata/splited/trinucleosome.bam.bai
man/ATACseqQC-package.Rd
man/enrichedFragments.Rd
man/factorFootprints.Rd
man/fragSizeDist.Rd
man/plotFootprints.Rd
man/pwmscores.Rd
man/readBamFile.Rd
man/shiftGAlignmentsList.Rd
man/shiftReads.Rd
man/splitBam.Rd
man/splitGAlignmentsByCut.Rd
man/writeListOfGAlignments.Rd
vignettes/ATACseqQC.Rmd
vignettes/CTCFfootprints.png
vignettes/bibliography.bib
vignettes/nature.csl
