Files in jaleesr/TrendCatcher_1.0.0
TrendCatcher: A Versitile R package for analyse longitudinal RNA-seq study
.Rbuildignore
.gitignore
DESCRIPTION
Meta/vignette.rds
NAMESPACE
R/Check_CountTable_Format.R
R/Dependencies.R
R/Utility.R
R/draw_CurveComp.R
R/draw_CurveComp_Perm.R
R/draw_GOHeatmap.R
R/draw_GeneTraj.R
R/draw_TimeHeatmap_GO.R
R/draw_TimeHeatmap_enrichR.R
R/draw_TimeHeatmap_selGO.R
R/draw_TrajClusterGrid.R
R/draw_TrajClusterPie.R
R/get_GeneSymbol.R
R/get_GeneTrajPattern.R
R/preprocess_TrendCatcher.R
R/run_TrendCatcher.R
R/run_TrendCatcherAllGenes.R
R/run_TrendCatcherSingleGene.R
README.md
TrendCatcher_1.0.0.pdf
doc/Compare-Curve-Permutation.R
doc/Compare-Curve-Permutation.Rmd
doc/Compare-Curve-Permutation.html
doc/Gene-Trajectory-Analysis.R
doc/Gene-Trajectory-Analysis.Rmd
doc/Gene-Trajectory-Analysis.html
doc/Identify-Dynamic-Genes.R
doc/Identify-Dynamic-Genes.Rmd
doc/Identify-Dynamic-Genes.html
doc/Time-Heatmap-GO.R
doc/Time-Heatmap-GO.Rmd
doc/Time-Heatmap-GO.html
docs/404.html
docs/articles/Compare-Curve-Permutation.html
docs/articles/Compare-Curve-Permutation_files/figure-html/unnamed-chunk-4-1.png
docs/articles/Compare-Curve-Permutation_files/figure-html/unnamed-chunk-5-1.png
docs/articles/Compare-Curve-Permutation_files/figure-html/unnamed-chunk-6-1.png
docs/articles/Compare-Curve-Permutation_files/figure-html/unnamed-chunk-8-1.png
docs/articles/Gene-Trajectory-Analysis.html
docs/articles/Gene-Trajectory-Analysis_files/figure-html/unnamed-chunk-5-1.png
docs/articles/Gene-Trajectory-Analysis_files/figure-html/unnamed-chunk-6-1.png
docs/articles/Gene-Trajectory-Analysis_files/figure-html/unnamed-chunk-7-1.png
docs/articles/Identify-Dynamic-Genes.html
docs/articles/Time-Heatmap-GO.html
docs/articles/Time-Heatmap-GO_files/figure-html/unnamed-chunk-10-1.png
docs/articles/Time-Heatmap-GO_files/figure-html/unnamed-chunk-5-1.png
docs/articles/Time-Heatmap-GO_files/figure-html/unnamed-chunk-8-1.png
docs/articles/Time-Heatmap-GO_files/figure-html/unnamed-chunk-9-1.png
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Check_CountTable_Format.html
docs/reference/Rplot001.png
docs/reference/cal_p.html
docs/reference/cal_time_p_single_gene.html
docs/reference/combine_p_single_gene.html
docs/reference/curveFitting.new.html
docs/reference/draw_CurveComp.html
docs/reference/draw_CurveComp_Perm.html
docs/reference/draw_GOHeatmap.html
docs/reference/draw_GeneTraj.html
docs/reference/draw_TimeHeatmap_GO.html
docs/reference/draw_TimeHeatmap_enrichR.html
docs/reference/draw_TimeHeatmap_selGO.html
docs/reference/draw_TrajClusterGrid.html
docs/reference/draw_TrajClusterPie.html
docs/reference/figures/CompareCurves.png
docs/reference/figures/Full_TimeHeatmap.png
docs/reference/figures/GOHeatmap.png
docs/reference/figures/IndividualGeneTraj.png
docs/reference/figures/QC.png
docs/reference/figures/TimeHeatmapenrichR.png
docs/reference/figures/TrajClusterGrid.png
docs/reference/figures/TrajClusterPie.png
docs/reference/figures/TrendCatcherWorkFlow.png
docs/reference/figures/draw_GeneTraj.png
docs/reference/fit_single_gene_const.html
docs/reference/fit_single_gene_spline.html
docs/reference/get_GeneEnsembl2Symbol.html
docs/reference/get_Symbol2GeneEnsembl.html
docs/reference/get_rep_array.html
docs/reference/get_time_array.html
docs/reference/index.html
docs/reference/permutation.new.html
docs/reference/preprocess_TrendCatcher.html
docs/reference/run_TrendCatcher.html
docs/reference/transform_single_gene_df.html
docs/sitemap.xml
index.md
inst/extdata/BrainMasterList.rda
inst/extdata/BrainMasterList_Symbol.rda
inst/extdata/Brain_DemoCountTable.csv
inst/extdata/Brain_DemoCountTable_test.csv
inst/extdata/Brain_DemoRawCountTable.csv
inst/extdata/Brain_TimeHeatmap.rda
inst/extdata/MasterListModerate.rda
inst/extdata/MasterListSevere.rda
inst/extdata/htSevere.rda
man/Check_CountTable_Format.Rd
man/cal_p.Rd
man/cal_time_p_single_gene.Rd
man/combine_p_single_gene.Rd
man/curveFitting.new.Rd
man/draw_CurveComp.Rd
man/draw_CurveComp_Perm.Rd
man/draw_GOHeatmap.Rd
man/draw_GeneTraj.Rd
man/draw_TimeHeatmap_GO.Rd
man/draw_TimeHeatmap_enrichR.Rd
man/draw_TimeHeatmap_selGO.Rd
man/draw_TrajClusterGrid.Rd
man/draw_TrajClusterPie.Rd
man/figures/CompareCurves.png
man/figures/Full_TimeHeatmap.png
man/figures/GOHeatmap.png
man/figures/IndividualGeneTraj.png
man/figures/QC.png
man/figures/TimeHeatmapenrichR.png
man/figures/TrajClusterGrid.png
man/figures/TrajClusterPie.png
man/figures/TrendCatcherWorkFlow.png
man/figures/draw_GeneTraj.png
man/fit_single_gene_const.Rd
man/fit_single_gene_spline.Rd
man/get_GeneEnsembl2Symbol.Rd
man/get_Symbol2GeneEnsembl.Rd
man/get_rep_array.Rd
man/get_time_array.Rd
man/permutation.new.Rd
man/preprocess_TrendCatcher.Rd
man/run_TrendCatcher.Rd
man/transform_single_gene_df.Rd
vignettes/Compare-Curve-Permutation.Rmd
vignettes/Gene-Trajectory-Analysis.Rmd
vignettes/Identify-Dynamic-Genes.Rmd
vignettes/Time-Heatmap-GO.Rmd
