Man pages for jamesdiao/clinvaR
collection, analysis, and visualization tools for ClinVar data
| annotate_1000g | Annotate 1000 Genomes Variant VCF using ClinVar |
| clinvaR-package | clinvaR: collection, analysis, and visualization tools for... |
| delete_downloads | Delete All Downloaded VCF.rds Files |
| download_1000g | Downloads VCF from 1000 Genomes using tabix |
| download_clinvar | Import ClinVar VCF |
| get_clinvar | Get ClinVar Version from Date |
| get_closest_date | Get Closest ClinVar Version Dates |
| get_date_list | Get List of Available ClinVar Version Dates |
| get_genes | Imports List of Genes from File |
| h_read | Convert seconds to human-readable time units |
| import_file_1000g | Imports downloaded VCF from 1000 Genomes |
| over_time | ClinVar Over Time Analyses |
| plot.annotated_vcf | Compute and Plot Aggregate Allele Frequencies for 1000... |
| plot.freq_dates | Plot Aggregate Population Frequencies Over Time |
| plot.penetrance_dates | Plot Aggregated Penetrance Over Time |
| plot.plain_vcf | Compute and Plot Aggregate Allele Frequencies for 1000... |
| plot.significance_dates | Plot Significances Over Time |
| plot.submission_dates | Plot Submissions Over Time |
| prettyprint | Formatted ggplot of ancestry-stratified 1000 Genomes allele... |
| update_clinvar | Download Newer Versions of ClinVar |
| var_plot_1000g | Compute and Plot Aggregate Allele Frequencies for 1000... |
