var_plot_1000g: Compute and Plot Aggregate Allele Frequencies for 1000...
In jamesdiao/clinvaR: collection, analysis, and visualization tools for ClinVar data
Description
This function takes a merged ClinVar-sequencing dataset and
returns an ancestry-stratified plot of allele frequencies
Usage
1
2
var_plot_1000g(vcf)
var_plot_1000g(vcf, fraction = FALSE)
Arguments
vcf
data.frame; clinvaR-processed VCF from 1000 Genomes. Defaults to importing from genes (if present).
fraction
logical; if TRUE, plots fraction with a finding. If FALSE, plots total counts.
jamesdiao/clinvaR documentation built on May 18, 2019, 11:19 a.m.
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Description
This function takes a merged ClinVar-sequencing dataset and returns an ancestry-stratified plot of allele frequencies
Usage
1 2 | var_plot_1000g(vcf)
var_plot_1000g(vcf, fraction = FALSE)
|
Arguments
vcf |
data.frame; clinvaR-processed VCF from 1000 Genomes. Defaults to importing from genes (if present). |
fraction |
logical; if TRUE, plots fraction with a finding. If FALSE, plots total counts. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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