download_1000g: Downloads VCF from 1000 Genomes using tabix
In jamesdiao/clinvaR: collection, analysis, and visualization tools for ClinVar data
Description
Usage
Arguments
Examples
Description
This function downloads a gene's VCF from the 1000 Genomes FTP based on its transcription region
as listed in the UCSC Genome database.
Usage
1
download_1000g(genes, download)
Arguments
genes
character; name of a gene(s) indexed in refGene
download
logical; indicates whether to download the file.
FALSE still returns transcription coordinates and RefGene details from UCSC.
Examples
1
2
download_1000g('BRCA2', download = T)
download_output <- sapply(ACMG.panel, function(gene) download_1000g(gene, download = T)) %>% t
jamesdiao/clinvaR documentation built on May 18, 2019, 11:19 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Examples
Description
This function downloads a gene's VCF from the 1000 Genomes FTP based on its transcription region as listed in the UCSC Genome database.
Usage
1 | download_1000g(genes, download)
|
Arguments
genes |
character; name of a gene(s) indexed in refGene |
download |
logical; indicates whether to download the file. FALSE still returns transcription coordinates and RefGene details from UCSC. |
Examples
1 2 | download_1000g('BRCA2', download = T)
download_output <- sapply(ACMG.panel, function(gene) download_1000g(gene, download = T)) %>% t
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.