Man pages for jamesdiao/clinvaR
collection, analysis, and visualization tools for ClinVar data

annotate_1000gAnnotate 1000 Genomes Variant VCF using ClinVar
clinvaR-packageclinvaR: collection, analysis, and visualization tools for...
delete_downloadsDelete All Downloaded VCF.rds Files
download_1000gDownloads VCF from 1000 Genomes using tabix
download_clinvarImport ClinVar VCF
get_clinvarGet ClinVar Version from Date
get_closest_dateGet Closest ClinVar Version Dates
get_date_listGet List of Available ClinVar Version Dates
get_genesImports List of Genes from File
h_readConvert seconds to human-readable time units
import_file_1000gImports downloaded VCF from 1000 Genomes
over_timeClinVar Over Time Analyses
plot.annotated_vcfCompute and Plot Aggregate Allele Frequencies for 1000...
plot.freq_datesPlot Aggregate Population Frequencies Over Time
plot.penetrance_datesPlot Aggregated Penetrance Over Time
plot.plain_vcfCompute and Plot Aggregate Allele Frequencies for 1000...
plot.significance_datesPlot Significances Over Time
plot.submission_datesPlot Submissions Over Time
prettyprintFormatted ggplot of ancestry-stratified 1000 Genomes allele...
update_clinvarDownload Newer Versions of ClinVar
var_plot_1000gCompute and Plot Aggregate Allele Frequencies for 1000...
jamesdiao/clinvaR documentation built on Aug. 3, 2017, 11:05 p.m.