Files in jameshay218/driftSim
Short-sighted evolution of influenza cellular receptor binding avidity shapes influenza epidemic dynamics
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/antigenic_drift.R
R/data.R
R/driftSim.R
R/zzz.R
README.md
build_win.R
data/exampleParameters.rda
inst/doc/.Rhistory
inst/doc/outputs.R
inst/doc/outputs.Rmd
inst/doc/outputs.html
inst/doc/science.R
inst/doc/science.Rmd
inst/doc/science.html
inst/doc/technical.R
inst/doc/technical.Rmd
inst/doc/technical.html
inst/doc/transmission_model.R
inst/doc/transmission_model.Rmd
inst/doc/transmission_model.html
inst/doc/tutorial.R
inst/doc/tutorial.Rmd
inst/doc/tutorial.html
inst/doc/uml3.png
inst/doc/uml3.svg
inst/shiny-examples/driftSimApp/outputs/deltaVMat.csv
inst/shiny-examples/driftSimApp/outputs/hosts_1.csv
inst/shiny-examples/driftSimApp/outputs/hosts_2.csv
inst/shiny-examples/driftSimApp/outputs/scenario_1_SIR.csv
inst/shiny-examples/driftSimApp/outputs/scenario_2_SIR.csv
inst/shiny-examples/driftSimApp/outputs/scenario_3_SIR.csv
inst/shiny-examples/driftSimApp/outputs/scenario_4_SIR.csv
inst/shiny-examples/driftSimApp/outputs/viruses_1.csv
inst/shiny-examples/driftSimApp/outputs/viruses_2.csv
inst/shiny-examples/driftSimApp/outputs/voutput1_1.csv
inst/shiny-examples/driftSimApp/outputs/voutput1_2.csv
inst/shiny-examples/driftSimApp/outputs/voutput2_1.csv
inst/shiny-examples/driftSimApp/outputs/voutput2_2.csv
inst/shiny-examples/driftSimApp/server.R
inst/shiny-examples/driftSimApp/ui.R
man/calculate_deltaV_matrix.Rd
man/countKs.Rd
man/driftSim-package.Rd
man/exampleParameters.Rd
man/generateHostKDist.Rd
man/generateHostKDist_2.Rd
man/generateKSamples.Rd
man/generateStartK.Rd
man/plot_SIR.Rd
man/runSimulationApp.Rd
man/run_simulation.Rd
man/run_simulation_cpp.Rd
man/scenario_descriptions.Rd
src/RcppExports.cpp
src/host.cpp
src/host.hpp
src/hostpopulation.cpp
src/hostpopulation.hpp
src/rcpp_interface.cpp
src/virus.cpp
src/virus.hpp
tests/testthat.R
tests/testthat/test.R
vignettes/outputs.Rmd
vignettes/outputs.html
vignettes/science.Rmd
vignettes/science.html
vignettes/technical.Rmd
vignettes/technical.html
vignettes/transmission_model.Rmd
vignettes/transmission_model.html
vignettes/uml3.png
vignettes/uml3.svg
