driftSim-package: Individual based model for evolution of influenza viruses

In jameshay218/driftSim: Short-sighted evolution of influenza cellular receptor binding avidity shapes influenza epidemic dynamics

Description

Implementation of an R/C++ individual based model for simulating evolutionary dynamics of influenza binding avidity and antigenic drift in a human population with adaptive immunity.

Details

The package itself is well described in the vignettes available at www.github.com/jameshay218/driftSim. If you want to get started here, look at exampleParameters for example parameter values to get going and the run_simulation documentation. Also might be worthwhile looking at runSimulationApp if you want to use the shiny app.

See Also

Useful links:

• https://github.com/jameshay218/driftSim

• Report bugs at https://github.com/jameshay218/driftSim/issues

jameshay218/driftSim documentation built on Jan. 24, 2020, 6:14 p.m.