Implementation of an R/C++ individual based model for simulating evolutionary dynamics of influenza binding avidity and antigenic drift in a human population with adaptive immunity.
The package itself is well described in the vignettes available at www.github.com/jameshay218/driftSim. If you want to get started here, look at exampleParameters
for example parameter values to get going and the run_simulation
documentation. Also might be worthwhile looking at runSimulationApp
if you want to use the shiny app.
Useful links:
Report bugs at https://github.com/jameshay218/driftSim/issues
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