calculate_deltaV_matrix: Calculate binding avidity adaptation matrix
In jameshay218/driftSim: Short-sighted evolution of influenza cellular receptor binding avidity shapes influenza epidemic dynamics
Description
Usage
Arguments
Value
View source: R/antigenic_drift.R
Description
Calculates the gradient of binding avidity adaptation for different levels of host immunity.
This is useful because we need to solve some ODEs for each combination of host immunity and
each possible binding avidity value ie. precomputation
Usage
1
calculate_deltaV_matrix(viruspars, maxV = 3, maxK = 25, step = 1)
Arguments
viruspars
the vector of virus pars as taken by run_simulation
maxV
the maximum binding avidity to calculate for
maxK
the maximum achievable antibody titre in which the virus will have to adapt
step
over how much time does this adaptation take place? usually 1 day
Value
a numeric matrix
jameshay218/driftSim documentation built on Jan. 24, 2020, 6:14 p.m.
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Description Usage Arguments Value
View source: R/antigenic_drift.R
Description
Calculates the gradient of binding avidity adaptation for different levels of host immunity. This is useful because we need to solve some ODEs for each combination of host immunity and each possible binding avidity value ie. precomputation
Usage
1 | calculate_deltaV_matrix(viruspars, maxV = 3, maxK = 25, step = 1)
|
Arguments
viruspars |
the vector of virus pars as taken by |
maxV |
the maximum binding avidity to calculate for |
maxK |
the maximum achievable antibody titre in which the virus will have to adapt |
step |
over how much time does this adaptation take place? usually 1 day |
Value
a numeric matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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