Man pages for jameshay218/driftSim
Short-sighted evolution of influenza cellular receptor binding avidity shapes influenza epidemic dynamics
| calculate_deltaV_matrix | Calculate binding avidity adaptation matrix |
| countKs | Counts Ks |
| driftSim-package | Individual based model for evolution of influenza viruses |
| exampleParameters | Example parameters |
| generateHostKDist | Generate distribution of host immunity from file |
| generateHostKDist_2 | Generate distribution of host immunity |
| generateKSamples | Generate N samples of immune values (K) |
| generateStartK | Draws a single starting immune value from a cumulative vector... |
| plot_SIR | SIR dynamics plot |
| run_simulation | Main simulation interface |
| runSimulationApp | Launches the shiny app interface |
| run_simulation_cpp | Interface to the entire C++ driftSim simulation |
| scenario_descriptions | Descriptions of model scenarios |
