API for jameshay218/vaxedemic
Optimal allocation of vaccination during a pandemic
| Global functions | |
|---|---|
| Map_vapply | Man page Source code |
| add | Man page Source code |
| apply_named_args | Man page Source code |
| calc_approx_final_size_distribution | Man page Source code |
| calc_country_attack | Man page Source code |
| calc_country_time_series | Man page Source code |
| calc_cumulative_deaths_time_series | Man page Source code |
| calc_final_size_propn_deterministic | Source code |
| calc_global_deaths | Source code |
| calc_incidence_peak_times_attack_rates_deaths | Man page Source code |
| calc_incidence_time_series | Man page Source code |
| calc_incidence_vaccinated_peak_times_attack_rates | Man page Source code |
| calc_incidence_vaccinated_peak_times_attack_rates_deaths | Man page Source code |
| calc_median_ci_by_country | Man page Source code |
| calc_median_global_deaths | Source code |
| calc_peak_times | Man page Source code |
| calc_peak_times_and_attack_rates | Man page Source code |
| calc_vaccinated_time_series | Man page Source code |
| calibrating_amp_and_travel | Man page Source code |
| change_fixed_vacc_allocations_and_seed | Source code |
| change_seed | Source code |
| combine_incidence | Source code |
| combine_incidence_region | Source code |
| cum_vax_pool_func_closure | Man page Source code |
| deaths | Source code |
| deaths_GAR_df | Source code |
| density_country_attack_rates | Man page Source code |
| density_country_peak_times | Man page Source code |
| distribute_vax_among_age_risk_closure | Man page Source code |
| format_data_for_plots | Source code |
| gen_int_sum_int | Man page Source code |
| generate_age_matrix | Man page Source code |
| generate_age_matrix_uniform | Man page Source code |
| generate_age_mixing | Man page Source code |
| generate_contact_matrix | Man page Source code |
| generate_data_labels | Source code |
| generate_risk_matrix | Source code |
| get_final_sizes_with_R_eff | Man page Source code |
| get_func_names | Man page Source code |
| get_user_options | Man page Source code |
| get_vars_from_list_with_check | Man page Source code |
| get_vaxedemic_func_options | Man page Source code |
| global_attack | Source code |
| initial_test | Man page Source code |
| is_integer_like | Man page Source code |
| kronecker_by_group | Source code |
| list2here | Man page Source code Source code |
| list_vars_from_environment | Man page Source code |
| main_simulation | Man page Source code |
| make_arg_list | Man page Source code |
| make_y_label | Man page Source code |
| many_dead | Source code |
| model_plot_simple | Man page Source code |
| model_plots | Man page Source code |
| neaten_raw_output_by_country | Man page Source code |
| normalise | Man page Source code |
| num2str | Man page Source code |
| plot_age_group | Source code |
| plot_country_attack_rates | Man page Source code |
| plot_country_incidence | Man page Source code |
| plot_country_time_series | Man page Source code |
| plot_country_vaccinated | Man page Source code |
| plot_peak_times | Man page Source code |
| postprocessing_country_attack | Man page Source code |
| postprocessing_deaths | Man page Source code |
| postprocessing_incidence_peak_times_attack_rates_deaths | Man page Source code |
| postprocessing_incidence_vaccinated_peak_times_attack_rates | Man page Source code |
| postprocessing_incidence_vaccinated_peak_times_attack_rates_deat | Man page Source code |
| postprocessing_peak_times | Man page Source code |
| postprocessing_peak_times_and_attack_rates | Man page Source code |
| postprocessing_save_country_incidence | Man page Source code |
| postprocessing_save_country_vaccinated | Man page Source code |
| postprocessing_simple_save | Man page Source code |
| print_z_test_result | Source code |
| produce_vax_linear_with_delay | Man page Source code |
| random_vacc_allocations | Source code |
| read_contact_data | Man page Source code |
| read_coverage_data | Man page Source code |
| read_latitude_data | Man page Source code |
| result_z_test_adjust_alpha | Source code |
| return_all_res | Man page Source code |
| round_preserve_sum | Man page Source code |
| run_and_get_deaths_recovered | Man page Source code |
| run_fixed_params | Man page Source code |
| run_fixed_params_and_postprocess | Man page Source code |
| run_simulation | Man page Source code |
| scientific_10x | Man page Source code |
| setup_cluster | Man page Source code |
| setup_demography_real_data | Source code |
| setup_demography_sim_data | Source code |
| setup_inputs | Man page Source code |
| setup_populations | Man page Source code |
| setup_populations_real_data | Man page Source code |
| setup_travel_real_data | Man page Source code |
| shorten_runs | Man page Source code |
| shrink_data | Source code |
| sum_age_risk_closure | Man page Source code |
| sum_list | Man page Source code |
| thin_time_series | Man page Source code |
| time_end | Source code |
| two_tailed_p_value | Source code |
| vaccinate_by_current_seasonal_alloc | Man page Source code |
| vaccinate_by_incidence | Man page Source code |
| vaccine_allocation_closure | Man page Source code |
| vcapply | Man page Source code |
| viapply | Man page Source code |
| vlapply | Man page Source code |
| vnapply | Man page Source code |
| worldwide_deaths | Source code |
| z_test | Source code |
