plot_setup_data: Get plot data

In jameshay218/zikaProj: zikaInfer

Description

Given an MCMC chain and other parameters, returns a list of data frames that can be used to generate an incidence plot

Usage

plot_setup_data(chain, dat = NULL, incDat = NULL, parTab, ts, local,
  runs = NULL, startDay = 0, noMonths = 12, noWeeks = 52,
  perCap = FALSE, forecast = FALSE, forecastPostChange = FALSE)

Arguments

chain	the MCMC chain
dat	the data frame of real microcephaly data
incDat	the data frame of real ZIKV incidence data
parTab	the parameter table
ts	vector of times
local	string for state under consideration
runs	the number of samples to take
startDay	if realDat is not provided, need to provide the first day on which we want to see predicted microcephaly numbers
noMonths	if realDat not provided, need to provide the number of months of forecasted data that we wish to see
noWeeks	if no incidence data provided, number of weeks over which we should plot the data

jameshay218/zikaProj documentation built on Jan. 9, 2020, 7:26 p.m.