Description Usage Arguments Value
Given the time vector, initial conditions ODE parameters and a matrix of microcephaly data, calculates the posterior value for a given data set.
1 2 3 4 5 6 7 | posterior_complex_buckets(ts, values, names, local, startDays, endDays, buckets,
microCeph, births, data_locals, inc_startDays = NULL, inc_endDays = NULL,
inc_locals = NULL, inc_buckets = NULL, inc_ZIKV = NULL, inc_NH = NULL,
peak_startDays = NULL, peak_endDays = NULL, peak_locals = NULL,
unique_locations, microceph_valid_days = NULL,
microceph_valid_local = NULL, inc_valid_days = NULL,
inc_valid_local = NULL, solver = "rlsoda")
|
ts |
time vector over which to solve the ODE model |
values |
ODE parameters |
names |
names for the ODE parameters |
local |
names of all the locations that are being considered in microcephaly data corresponding to parTab (ie. gets indices for each location from the parameter table) |
startDays |
vector of the start day for each bucket of microcephaly data |
endDays |
vector of the end day for each bucket of microcephaly data |
buckets |
bucket sizes for microcephaly sampling periods |
microCeph |
vector of microcephaly incidence for each bucket |
births |
vector of total briths for each bucket |
data_locals |
corresponding vector of location names for the microcephaly data |
inc_startDays |
start day vector for incidence data |
inc_endDays |
end day vector for incidence data |
inc_locals |
vector of location names for incidence data |
inc_buckets |
sampling window vector for incidence data |
inc_ZIKV |
vector of ZIKV incidence for each time point |
inc_NH |
vector of population size over time |
peak_startDays |
vector of initial allowable day of incidence peak time |
peak_endDays |
vector of end allowable day of incidence peak time |
peak_locals |
vector of corresponding location names |
unique_locations |
vector of all unique locations |
microceph_valid_days |
vector of all days included in the microcephaly data |
microceph_valid_local |
vector of locations corresponding to the days in microceph_valid_days |
inc_valid_days |
vector of all days included in the incidence data |
inc_valid_local |
vector of locations corresponding to the days in inc_valid_days |
solver |
specify which ODE solver to use, between "rlsoda" and "lsoda" |
a single value for the posterior
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