posterior_inc: Posterior function for the simple SEIR model with incidence...
In jameshay218/zikaProj: zikaInfer

Given the time vector, ODE parameters and deconstructed matrix of incidence data, calculates the posterior probability for a given data set.

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posterior_inc(ts, values, names, local, inc_startDays, inc_endDays, inc_locals,
  inc_buckets, inc_ZIKV, inc_NH, unique_locations, inc_valid_days = NULL,
  inc_valid_local = NULL, solver = "rlsoda")

`ts`	time vector over which to solve the ODE model
`values`	model parameters
`names`	names of the model parameters
`local`	the vector of location names corresponding to the parameter table
`inc_startDays`	vector of all starting days for reporting buckets
`inc_endDays`	vector of all end days for reporting buckets
`inc_buckets`	vector of all reporting bucket sizes
`inc_ZIKV`	vector of reported ZIKV case
`inc_NH`	vector of all population sizes
`unique_locations`	vector of all unique locations to be tested
`inc_valid_days`	vector of all days included in the incidence data
`inc_valid_local`	vector of locals corresponding to the days in inc_valid_days
`solver`	which ODE solver to use, either "rlsoda" or "lsoda"
`inc_local`	vector of all location names corresponding to the incidence table