Description Usage Arguments Value
Using the microcephaly risk model, produces a forecast of microcephaly affected births for all time periods and calculates a likelihood of observing given microcephaly cases NOTE that baselineProb is on a log scale in this analysis
1 2 | posterior_known_inc_seir(pars, startDays, endDays, buckets, microCeph, births,
zikv, nh, inc_buckets, inc_start, inc_end, solver = "rlsoda")
|
pars |
model parameters |
startDays |
vector of all starting days for reporting buckets |
endDays |
vector of all end days for reporting buckets |
buckets |
vector of all reporting bucket sizes |
microCeph |
vector of reported microcephaly cases |
births |
vector of birth numbers |
zikv |
vector of ZIKV incidence |
nh |
vector of population sizes over time |
inc_buckets |
vector of reporting windows for ZIKV incidence |
inc_start |
vector of all start days for ZIKV reporting buckets |
inc_end |
vector of all end days for reporting ZIKV buckets |
solver |
which ODE solver to use, either "rlsoda" or "lsoda" |
a single value for the posterior
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