posterior_known_inc_seir: Posterior function for forecasting analysis
In jameshay218/zikaProj: zikaInfer

Using the microcephaly risk model, produces a forecast of microcephaly affected births for all time periods and calculates a likelihood of observing given microcephaly cases NOTE that baselineProb is on a log scale in this analysis

1 2	posterior_known_inc_seir(pars, startDays, endDays, buckets, microCeph, births, zikv, nh, inc_buckets, inc_start, inc_end, solver = "rlsoda")

`pars`	model parameters
`startDays`	vector of all starting days for reporting buckets
`endDays`	vector of all end days for reporting buckets
`buckets`	vector of all reporting bucket sizes
`microCeph`	vector of reported microcephaly cases
`births`	vector of birth numbers
`zikv`	vector of ZIKV incidence
`nh`	vector of population sizes over time
`inc_buckets`	vector of reporting windows for ZIKV incidence
`inc_start`	vector of all start days for ZIKV reporting buckets
`inc_end`	vector of all end days for reporting ZIKV buckets
`solver`	which ODE solver to use, either "rlsoda" or "lsoda"