posterior_simple_buckets: Posterior function for the simple SEIR model with bucketed...
In jameshay218/zikaProj: zikaInfer

Given the time vector, initial conditions ODE parameters and a matrix of microcephaly data, calculates the posterior value for a given data set. Note that no priors are used here.

posterior_simple_buckets(ts, y0s, pars, startDays, endDays, buckets, microCeph,
  births, zikv = NULL, nh = NULL, inc_buckets = NULL, inc_start = NULL,
  inc_end = NULL, peak_start = NULL, peak_end = NULL,
  valid_days_micro = NULL, valid_days_inc = NULL, solver = "rlsoda")

`ts`	time vector over which to solve the ODE model
`y0s`	initial conditions for the ODE model
`pars`	ODE parameters
`startDays`	vector of the start day for each bucket of data
`endDays`	vector of the end day for each bucket of data
`buckets`	bucket sizes
`microCeph`	vector of microcephaly incidence for each bucket
`births`	vector of total briths for each bucket
`zikv`	vector of ZIKV incidence
`nh`	vector of population sizes
`inc_buckets`	vector of bucket size for incidence data
`inc_start`	vector of inc start days
`inc_end`	vector of inc end days
`peak_start`	vector of peak time start days
`peak_end`	vector of peak time end days
`valid_days_micro`	a vector of days for which data were collected, allowing non-contiguous comparisons. Microcephaly
`valid_days_inc`	a vector of days for which data were collected, allowing non-contiguous comparisons. Incidence
`solver`	which ODE solver to use, either "rlsoda" or "lsoda"