read_all_data: Read all data
In jameshay218/zikaProj: zikaInfer

Function to read in microcephaly and incidence data. Converts strings to factors, and orders them by microcephaly cases

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read_all_data(microCephFile = "~/net/home/zika/data/microcephaly_data.csv",
  incDatFile = "~/net/home/zika/data/inc_data.csv",
  epidemicLocations = FALSE, order = TRUE, convert = TRUE)

`microCephFile`	full filepath to microcephaly data
`incDatFile`	full filepath ot incidence data
`epidemicLocations`	if TRUE, gets only epidemic locations. Otherwise gives all locations
`order`	if TRUE, orders the locations by per capita microcephaly rate
`convert`	if TRUE, converts strings to factors