accInfo: Display meta-info of dbGaP objects

In jameslhao/dbgapr_dev: A dbGaP Phenotype Data Organizer

Description

The method displays the meta-info of the dbGaP objects given an object accession. The object can be a dbGaP study, dataset, or variable.

Usage

accInfo(object, acc, ...)

## S4 method for signature 'Commons'
accInfo(object, acc, ..., display = TRUE)

Arguments

object	Commons class object.
acc	a character string. The dbGaP study, dataset, or variable accession.
...	There are optional arguments.
display	a logical value. (optional) If TRUE (default), console displays the meta-info. If FALSE, not display.

Value

a data frame. (invisible) The meta-info of the input object.

Methods (by class)

• Commons: returns dataset accession

Examples

## Not run: 

c <- Commons()
df <- accInfo(c, acc = 'phs000001.v3.p1')
# or
df <- accInfo(c, acc = 'pht000824.v5')
# or
df <- accInfo(c, acc = 'phv00000090.v2')     # numeric with units
# or
df <- accInfo(c, acc = 'phv00000122.v2')     # categorical with code-value 

## End(Not run)

jameslhao/dbgapr_dev documentation built on May 8, 2019, 11:03 p.m.