API for jameslhao/dbgapr_dev
A dbGaP Phenotype Data Organizer

Global functions
Commons Man page
Commons-class Man page
Study Man page
Study-class Man page
accInfo Man page
accInfo,Commons-method Man page
buildVarCodeValCombo Man page
buildVarCodeValCombo,Commons,character-method Man page
checkInputPath Man page
checkInputPath,Commons,character-method Man page
checkObjStudyByAcc Man page
checkObjStudyByAcc,Study,character-method Man page
checkPhvAccList Man page
checkPhvAccList,Study,character-method Man page
cleanObjAcc Man page
cleanObjAcc,Commons-method Man page
commons_internal Man page
commons_public Man page
composeFileInfoJson Man page
composeFileInfoJson,Commons-method Man page
composeObjAcc Man page
composeObjAcc,Commons-method Man page
convertEnumVarColName Man page
convertEnumVarColName,Commons,data.frame-method Man page
copyUserFile Man page
copyUserFile,Commons,character-method Man page
createPrjDir Man page
createPrjDir,Commons,character-method Man page
dataDicXmlParser Man page
dataDicXmlParser,Commons,character-method Man page
dbgapr Man page
dbgapr-package Man page
detectVariableDataType Man page
detectVariableDataType,Commons,character-method Man page
displayTable Man page
displayTable,Commons-method Man page
displayTextFile Man page
displayTextFile,Commons,character-method Man page
filterBySubjIds Man page
filterBySubjIds,Commons,data.frame-method Man page
ftpDownload Man page
ftpDownload,Commons-method Man page
getAllDatasetInfo Man page
getAllDatasetInfo,Commons-method Man page
getAllStudyInfo Man page
getAllStudyInfo,Commons-method Man page
getAvailPhtVer Man page
getAvailPhtVer,Commons,character-method Man page
getDataDicByStudy Man page
getDataDicByStudy,Commons,character-method Man page
getDatasetDataByPhtAcc Man page
getDatasetDataByPhtAcc,Study,character-method Man page
getDatasetMetaByStudy Man page
getDatasetMetaByStudy,Commons,character-method Man page
getExtData Man page
getExtData,Commons,character-method Man page
getIdInfo Man page
getIdInfo,Study-method Man page
getMetaByObjAcc Man page
getMetaByObjAcc,Commons-method Man page
getPrjDir Man page
getPrjDir,Commons-method Man page
getStudyDatasetInfo Man page
getStudyDatasetInfo,Study-method Man page
getStudyVariableData Man page
getStudyVariableData,Study-method Man page
getStudyVariableInfo Man page
getStudyVariableInfo,Study-method Man page
getStudyVariableInfoByDataType Man page
getStudyVariableInfoByDataType,Study,character-method Man page
getStudyVariableInfoByTerms Man page
getStudyVariableInfoByTerms,Study,character-method Man page
getVarNameAccCombos Man page
getVarNameAccCombos,Study,character-method Man page
getVarNameByPhvAcc Man page
getVarNameByPhvAcc,Commons,character-method Man page
getVariableDataByPhvAcc Man page
getVariableDataByPhvAcc,Study,character-method Man page
getVariableDataByPhvAccAndSubjId Man page
getVariableDataByPhvAccAndSubjId,Study,character-method Man page
getVariableInfoByPhvAcc Man page
getVariableInfoByPhvAcc,Study,character-method Man page
initialize,Commons-method Man page
initialize,Study-method Man page
isStudyAcc Man page
isStudyAcc,Commons,character-method Man page
manageArchive Man page
manageArchive,Commons,character-method Man page
mergeDatasetConsent Man page
mergeDatasetConsent,Commons-method Man page
mergeDatasetConsentByStudy Man page
mergeDatasetConsentByStudy,Commons,character-method Man page
parseDataDic Man page
parseDataDic,Commons-method Man page
parseDataDicByStudy Man page
parseDataDicByStudy,Commons,character-method Man page
parseIdsFromPhtAcc Man page
parseIdsFromPhtAcc,Commons-method Man page
parseIdsFromPhvAcc Man page
parseIdsFromPhvAcc,Commons-method Man page
parseIdsFromStAcc Man page
parseIdsFromStAcc,Commons-method Man page
parsePhenoFileMeta Man page
parsePhenoFileMeta,Commons,character-method Man page
parsePhtHeaderFromFile Man page
parsePhtHeaderFromFile,Commons,character-method Man page
prepareData Man page
prepareData,Commons,character-method Man page
prjConfig Man page
prjConfig,Commons,character-method Man page
recordPrjFileInfo Man page
recordPrjFileInfo,Commons-method Man page
saveGapPlot Man page
saveGapPlot,Commons-method Man page
searchCopyPhenoFiles Man page
searchCopyPhenoFiles,Commons,character-method Man page
show,Commons-method Man page
show,Study-method Man page
stripColNameAcc Man page
stripColNameAcc,Commons,character-method Man page
study_internal Man page
study_public Man page
variableBoxplot Man page
variableBoxplot,Study,character-method Man page
variableCorrelHeatmap Man page
variableCorrelHeatmap,Study,character-method Man page
variableHistogram Man page
variableHistogram,Study,character-method Man page
variablePiechart Man page
variablePiechart,Study,character-method Man page
variableScatterplot Man page
variableScatterplot,Study,character-method Man page
variableSummary Man page
variableSummary,Study,character-method Man page
variableVenndiagram Man page
variableVenndiagram,Study,character-method Man page
viewAllDatasetInfo Man page
viewAllDatasetInfo,Commons-method Man page
viewAllStudyInfo Man page
viewAllStudyInfo,Commons-method Man page
viewStudyVariableInfo Man page
viewStudyVariableInfo,Study-method Man page
writeFileInfoJson Man page
writeFileInfoJson,Commons-method Man page
writeLog Man page
writeLog,Commons,character-method Man page
jameslhao/dbgapr_dev documentation built on Aug. 15, 2017, 11:22 p.m.