parseIdsFromStAcc: Parse ids from dbGaP study accession

In jameslhao/dbgapr_dev: A dbGaP Phenotype Data Organizer

Description

The method parses out id strings from a dbGaP study accession.

Usage

parseIdsFromStAcc(object, phsAcc)

## S4 method for signature 'Commons'
parseIdsFromStAcc(object, phsAcc)

Arguments

object	Commons class object.
phsAcc	a character string. A dbGaP study accession with or without the p# (participant-set number), e.g. phs000001.v3.p1 or phs000001.v3.

Value

a named character list. The list of parsed id strings including 'phsAcc' for study accession, 'phsAccNoVer' for the study accession with the v# (version number) removed. 'phsAccId' for study id, and 'phsAccVer' for study version.

Methods (by class)

• Commons: A method of class Commons

Examples

## Not run: 

c <- Commons() 
parseIdsFromStAcc(c, phsAcc = 'phs000001.v3.p1')

## End(Not run)

jameslhao/dbgapr_dev documentation built on May 8, 2019, 11:03 p.m.