Files in jameslhao/dbgapr_dev
A dbGaP Phenotype Data Organizer
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/Commons.R
R/Study.R
R/commons_internal.R
R/commons_public.R
R/dbgap.R
R/study_internal.R
R/study_public.R
README.Rmd
README.md
dbgapr.Rproj
inst/doc/introduction.Rmd
inst/doc/introduction.html
man/Commons-class.Rd
man/Study-class.Rd
man/accInfo.Rd
man/buildVarCodeValCombo.Rd
man/checkInputPath.Rd
man/checkObjStudyByAcc.Rd
man/checkPhvAccList.Rd
man/cleanObjAcc.Rd
man/commons_internal.Rd
man/commons_public.Rd
man/composeFileInfoJson.Rd
man/composeObjAcc.Rd
man/convertEnumVarColName.Rd
man/copyUserFile.Rd
man/createPrjDir.Rd
man/dataDicXmlParser.Rd
man/dbgapr-package.Rd
man/detectVariableDataType.Rd
man/displayTable.Rd
man/displayTextFile.Rd
man/filterBySubjIds.Rd
man/ftpDownload.Rd
man/getAllDatasetInfo.Rd
man/getAllStudyInfo.Rd
man/getAvailPhtVer.Rd
man/getDataDicByStudy.Rd
man/getDatasetDataByPhtAcc.Rd
man/getDatasetMetaByStudy.Rd
man/getExtData.Rd
man/getIdInfo.Rd
man/getMetaByObjAcc.Rd
man/getPrjDir.Rd
man/getStudyDatasetInfo.Rd
man/getStudyVariableData.Rd
man/getStudyVariableInfo.Rd
man/getStudyVariableInfoByDataType.Rd
man/getStudyVariableInfoByTerms.Rd
man/getVarNameAccCombos.Rd
man/getVarNameByPhvAcc.Rd
man/getVariableDataByPhvAcc.Rd
man/getVariableDataByPhvAccAndSubjId.Rd
man/getVariableInfoByPhvAcc.Rd
man/initialize-Commons-method.Rd
man/initialize-Study-method.Rd
man/isStudyAcc.Rd
man/manageArchive.Rd
man/mergeDatasetConsent.Rd
man/mergeDatasetConsentByStudy.Rd
man/parseDataDic.Rd
man/parseDataDicByStudy.Rd
man/parseIdsFromPhtAcc.Rd
man/parseIdsFromPhvAcc.Rd
man/parseIdsFromStAcc.Rd
man/parsePhenoFileMeta.Rd
man/parsePhtHeaderFromFile.Rd
man/prepareData.Rd
man/prjConfig.Rd
man/recordPrjFileInfo.Rd
man/saveGapPlot.Rd
man/searchCopyPhenoFiles.Rd
man/show-Commons-method.Rd
man/show-Study-method.Rd
man/stripColNameAcc.Rd
man/study_internal.Rd
man/study_public.Rd
man/variableBoxplot.Rd
man/variableCorrelHeatmap.Rd
man/variableHistogram.Rd
man/variablePiechart.Rd
man/variableScatterplot.Rd
man/variableSummary.Rd
man/variableVenndiagram.Rd
man/viewAllDatasetInfo.Rd
man/viewAllStudyInfo.Rd
man/viewStudyVariableInfo.Rd
man/writeFileInfoJson.Rd
man/writeLog.Rd
vignettes/figure/VennDiagram_AGECT_phv00054139.v1_DT_PROA_phv00053796.v2_SYST07_phv00000089.v2.png
vignettes/figure/barchart_phv00053733.v2_ADVSTAT.png
vignettes/figure/boxplot_phv00000027.v2_AGEPHOT_phv00000032.v2_MARITAL.png
vignettes/figure/boxplot_phv00053764.v2_LPSC.png
vignettes/figure/correlmatrix_SCHOOL_phv00000035.v2_RCORBASE_phv00000007.v2_DT_LYC_phv00053794.v2_DT_VITE_phv00053786.v2_DIAS12_phv00000106.v2.png
vignettes/figure/histogram_phv00053747.v2_LNUCSCORE.png
vignettes/figure/scatterplot_phv00000027.v2_AGEPHOT_phv00053747.v2_LNUCSCORE_phv00053757.v2_RNUC.png
vignettes/introduction.R
vignettes/introduction.Rmd
vignettes/introduction.html
vignettes/introduction.md
