API for jasonelaw/RIVPACS
Fit RIVPACS type models and calculate metrics from RIVPACS predictions
| Global functions | |
|---|---|
| biodiversity | Man page Source code |
| buildRIVPACS | Man page Source code |
| calculateExpected | Man page Source code |
| calculateNullExpected | Man page Source code |
| calculateOccurrenceProb | Man page Source code |
| calculateRIVPACSMetrics | Man page Source code |
| castSampleData | Man page Source code |
| clusterTaxa | Source code |
| collapseTaxa | Man page Source code |
| getCalibrationData | Man page Source code |
| getCalibrationData.rivpacs | Man page Source code |
| getCalibrationGroups | Man page Source code |
| getCalibrationGroups.rivpacs | Man page Source code |
| getCalibrationVars | Man page Source code |
| getCalibrationVars.rivpacs | Man page Source code |
| getFormula | Man page Source code |
| getFormula.rivpacs | Man page Source code |
| getGroupInvCov | Man page Source code |
| getGroupInvCov.rivpacs | Man page Source code |
| getGroupMeans | Man page Source code |
| getGroupMeans.rivpacs | Man page Source code |
| getModel | Man page Source code |
| getModel.rivpacs | Man page Source code |
| getPhylo4 | Source code |
| getPhylo4.biodiversity | Man page Source code |
| getSamples | Source code |
| getSamples.biodiversity | Man page Source code |
| getSamples.rivpacs | Man page Source code |
| getSites | Source code |
| getSites.biodiversity | Man page Source code |
| getSites.rivpacs | Man page Source code |
| getTraits | Source code |
| getTraits.biodiversity | Man page Source code |
| matchTaxa | Man page Source code |
| pooledCovariance | Source code |
| predict.rivpacs | Man page Source code |
| predictSiteGroup | Man page Source code |
| print.biodiversity | Man page Source code |
| rarify | Man page Source code |
| removeIntercept | Source code |
| resample | Man page Source code |
| responseToRownames | Source code |
| selectLDA | Source code |
