HeatMap: HeatMap

In jaspershen/MetFlow: Comprehensitive tools for metabolomics data processing and data analysis.

Description

Heat map

Usage

HeatMap(MetFlowData, log.scale = FALSE, color = c("palegreen",
  "firebrick1", "royalblue", "yellow", "black", "cyan", "gray48"),
  variable = "all", Group = c("control", "case"),
  scale.method = "auto", show_rownames = FALSE,
  show_colnames = FALSE, path = ".", width = 7, height = 7,
  border_color = NA, fontsize_row = 10, cluster_rows = TRUE,
  cluster_cols = TRUE, clustering_method = "ward.D", ...)

Arguments

MetFlowData	MetFlowData.
log.scale	log transformation or not.
color	Color list for sample group.
variable	"all" or "marker" for heatmap.
Group	group for heatmap.
scale.method	scale method.
show_rownames	Default is FALSE.
show_colnames	Default is FALSE.
path	Work directory.
width	Plot width
height	Plot height.
border_color	Default is NA.
fontsize_row	Default is 10.
cluster_rows	Default is TRUE.
cluster_cols	Default is TURE.
clustering_method	Default is"ward.D",
...	other parameters for pheatmap.

Value

A heatmap plot.

Author(s)

Xiaotao Shen [e-mail]

See Also

pheatmap

jaspershen/MetFlow documentation built on Aug. 1, 2019, 4:36 p.m.