Man pages for jaspershen/metflow2
Comprehensitive tools for metabolomics data processing and data analysis
| accurateAlign | peak.table |
| align2Batch | align2Batch |
| align_batch | align_batch |
| alignBatch | alignBatch |
| baINTplot | baINTplot |
| baMZplot | baMZplot |
| baRTplot | baRTplot |
| calculate_rsd | calculate_rsd |
| calFC | calFC |
| calP | calP |
| check_data | check_data |
| checkData | checkData |
| chromatogramPlot | chromatogramPlot |
| correct_rt | Correct RTs of peaks in peak table using internal standard... |
| create_metflow_object | create_metflow_object |
| creatMetflowObject | creatMetflowObject |
| cvMSE | cvMSE |
| databaseName | databaseName |
| doPCA | doPCA |
| dotsne | dotsne |
| extractEIC | extractEIC |
| extractPeaks | extractPeaks |
| filterPeak | filterPeak |
| filter_peaks | Filter peaks according to missing values. |
| filter_rsd | filter_rsd |
| filterRSD | filterRSD |
| filterSample | filterSample |
| filter_samples | Filter samples |
| getBatchAlignmentInfo | getBatchAlignmentInfo |
| get_data | Get data from metflowClass object. |
| getData | getData |
| get_metclass | get_metclass |
| getMVplot4sample | getMVplot4sample |
| get_mv_plot_samples | get_mv_plot_samples |
| get_parameters | get_parameters |
| get_peak_int_distribution | Get peak intensity distributation plot |
| GetWorklist | getWorklist |
| impute_mv | Impute MV in data. |
| imputeMV | Impute MV in data. |
| integrate_data | integrate_data |
| integrateData | integrateData |
| loessNor | loessNor |
| matchScore | matchScore |
| metflow2 | metflow2 |
| metflow2_logo | metflow2_logo |
| metflow2_packages | List all packages in the metflow2 |
| MRImatch | MRImatch |
| new_scale | new_scale |
| new_scale_color | new_scale_color |
| normalize_data | normalize_data |
| normalizeData | normalizeData |
| output_eic | output_eic |
| outputFeatureEIC | outputFeatureEIC |
| plotAdjustedRT | plotAdjustedRT |
| plot_chromatogram | plot_chromatogram |
| plot_tic | plot_tic |
| process_data | process_data |
| processData | processData |
| remove_duplicated_name | Remove the duplicated samples of peak tables from Thermo QE... |
| reName | reName |
| roughAlign | roughAlign |
| show_duplicated_samples | Show the duplicated samples of peak tables from Thermo QE... |
| show_peak | show_peak |
| showPeak | showPeak |
| showPeakPlot | showPeakPlot |
| simplyData | simplyData |
| svr_function | svr_function |
| svrNor | svrNor |
| SXTMTmatch | SXTMTmatch |
| SXTMTmatch2 | SXTMTmatch2 |
| sxtMVimputation | sxtMVimputation |
| sxtScale | sxtScale |
| transID | transID |
| volcanoPlot | VolcanoPlot |
