transID: transID

In jaspershen/metflow2: Comprehensitive tools for metabolomics data processing and data analysis

Description

Translate metabolite ID.

Usage

transID(
  query = "C00001",
  from = "KEGG",
  to = "PubChem SID",
  top = 1,
  server = c("http://cts.fiehnlab.ucdavis.edu/service/convert",
    "https://www.chemspider.com/InChI.asmx")
)

Arguments

query	The ID of metabolite you want to translate.
from	The databases of metabolites. Supported database can be shown using databaseName("from").
to	The databases of metabolites. Supported database can be shown using databaseName("to").
top	How many results should be returned?
server	server.

Value

A data frame.

Author(s)

Xiaotao Shen [e-mail]

jaspershen/metflow2 documentation built on Aug. 15, 2021, 4:38 p.m.