transID: transID

Description Usage Arguments Value Author(s)

View source: R/transID.R

Description

Translate metabolite ID.

Usage

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transID(
  query = "C00001",
  from = "KEGG",
  to = "PubChem SID",
  top = 1,
  server = c("http://cts.fiehnlab.ucdavis.edu/service/convert",
    "https://www.chemspider.com/InChI.asmx")
)

Arguments

query

The ID of metabolite you want to translate.

from

The databases of metabolites. Supported database can be shown using databaseName("from").

to

The databases of metabolites. Supported database can be shown using databaseName("to").

top

How many results should be returned?

server

server.

Value

A data frame.

Author(s)

Xiaotao Shen shenxt1990@163.com


jaspershen/metflow2 documentation built on Aug. 15, 2021, 4:38 p.m.