plotAllTagsSite: Plot all tag detections by deployment

In jbrzusto/motus: fetch and use data from http://motus.org

Description

Plot deployment (ordered by latitude) vs time (UTC) for each tag

Usage

plotAllTagsSite(data, coordinate = "recvDeployLat", tagsPerPanel = 5)

Arguments

data	a selected table from .motus data, eg. "alltags", or a data.frame of detection data including at a minimum variables for recvDeployName, fullID, mfgID, date/time, latitude or longitude
coordinate	column of receiver latitude/longitude values to use, defaults to recvDeployLat
tagsPerPanel	number of tags in each panel of the plot, default is 5

Author(s)

Zoe Crysler [e-mail]

Examples

You can use either a selected tbl from .motus eg. "alltags", or a data.frame, instructions to convert a .motus file to all formats are below.
sql.motus <- tagme(176, new = TRUE, update = TRUE) # download and access data from project 176 in sql format
tbl.alltags <- tbl(sql.motus, "alltags") # convert sql file "sql.motus" to a tbl called "tbl.alltags"
df.alltags <- tbl.alltags %>% collect %>% as.data.frame() ## convert the tbl "tbl.alltags" to a data.frame called "df.alltags"

Plot detections of dataframe df.alltags by site ordered by latitude, with default 5 tags per panel
plotAllTagsSite(df.alltags)

Plot detections of dataframe df.alltags by site ordered by latitude, with 10 tags per panel
plotAllTagsSite(df.alltags, tagsPerPanel = 10)

Plot detections of tbl file tbl.alltags by site ordered by receiver deployment latitude
plotAllTagsSite(tbl.alltags, coordinate = "recvDeployLon")

Plot tbl file tbl.alltags using gpsLat and 3 tags per panel for select species Red Knot
plotAllTagsSite(filter(tbl.alltags, speciesEN == "Red Knot"), coordinate = "gpsLat", tagsPerPanel = 3)

jbrzusto/motus documentation built on May 18, 2019, 7:03 p.m.