plotSite: Plot all tags by site

In jbrzusto/motus: fetch and use data from http://motus.org

Description

Plot tag ID vs time for all tags detected by site, coloured by antenna bearing

Usage

plotSite(data, sitename = unique(data$recvDeployName))

Arguments

data	a selected table from .motus data, eg. "alltags", or a data.frame of detection data including at a minimum variables for ts, antBearing, fullID, recvDeployName

Author(s)

Zoe Crysler [e-mail]

Examples

You can use either a selected tbl from .motus eg. "alltags", or a data.frame, instructions to convert a .motus file to all formats are below.
sql.motus <- tagme(176, new = TRUE, update = TRUE) # download and access data from project 176 in sql format
tbl.alltags <- tbl(sql.motus, "alltags") # convert sql file "sql.motus" to a tbl called "tbl.alltags"
df.alltags <- tbl.alltags %>% collect %>% as.data.frame() ## convert the tbl "tbl.alltags" to a data.frame called "df.alltags"

Plot all sites within file for tbl file tbl.alltags
plotSite(tbl.alltags)

Plot only detections at a specific site; Piskwamish for data.frame df.alltags
plotSite(filter(df.alltags, recvDeployName == "Piskwamish"))

Plot only detections for specified tags for data.frame df.alltags
plotSite(filter(df.alltags, motusTagID %in% c(16047, 16037, 16039)))

jbrzusto/motus documentation built on May 18, 2019, 7:03 p.m.