Man pages for jean997/jadeTF
| bs_var_tf | Estimate variance of a trendfiltering fit by bootstrapping |
| collect_methylation_data | Take multiple data frames with data from a single condition... |
| combine_replicates | Combine data across replicates |
| cv_err | Use cross validation paths to choose a value of gamma |
| cv_err_binom | Use cross validation paths to choose a value of gamma for... |
| cv_err_wts | Use cross validation paths to choose a value of gamma |
| cv_fit0 | Run initial cross validation fits for JADE |
| getobj | Get an object from an .RData file |
| get_regions_total | Calculate total number of separated regions for each fit in a... |
| get_sep | Determine which pairs of sites are separated. |
| get_separated_regions | Get a table of separated regions. |
| get_sep_total | Recalculate sep.total for a path that has already been run |
| jade_admm | Fit JADE |
| jade_path | Fit JADE at a sequence of gamma values without knowing much... |
| jade_path_planned | Fit JADE at a sequence of gamma values. |
| jade_permute | Run JADE with permuted group assignments |
| methylation_windows | Find window boundaries for methylation data |
| plot_jade | Plot a JADE fit |
| trendfilter_weights | Solve trendfiltering problem with weights. |
