Files in jean997/jadeTF
DESCRIPTION
NAMESPACE
R/bs_var_tf.R
R/cp_solution.R
R/cv_err.R
R/cv_err_binom.R
R/cv_err_sds.R
R/cv_fit0.R
R/cv_pred_tf.R
R/find_new_gamma.R
R/fit_gamma0.R
R/fit_gammamax.R
R/fit_one.R
R/get_separated_regions.R
R/jade_admm.R
R/jade_permute.R
R/jade_util.R
R/methylation_utils.R
R/path_planned.R
R/path_unplanned.R
R/plot_jade.R
R/project_new_gamma_spline.R
R/sep_to_partition.R
R/tf_weights.R
README.md
data/example_cv.rda
data/example_path.rda
data/fit0.rda
data/fit0_wts.rda
data/fit1.rda
data/prof_1.rda
data/profiles.rda
data/scaledProfiles.rda
jadeTF.Rproj
man/bs_var_tf.Rd
man/collect_methylation_data.Rd
man/combine_replicates.Rd
man/cv_err.Rd
man/cv_err_binom.Rd
man/cv_err_wts.Rd
man/cv_fit0.Rd
man/get_regions_total.Rd
man/get_sep.Rd
man/get_sep_total.Rd
man/get_separated_regions.Rd
man/getobj.Rd
man/jade_admm.Rd
man/jade_path.Rd
man/jade_path_planned.Rd
man/jade_permute.Rd
man/methylation_windows.Rd
man/plot_jade.Rd
man/trendfilter_weights.Rd
src/.gitignore
src/r_wrapper.c
src/read_clusterpath.cpp
src/ryansdp.cpp
src/tf_predict.c
vignettes/jadeTF.Rmd
vignettes/methylation_analysis.Rmd
