methylation_windows: Find window boundaries for methylation data
In jean997/jadeTF:
Description
Usage
Arguments
Value
Description
Find window boundaries for methylation data
Usage
1
2
methylation_windows(positions, gapsize = 2000, mindata = 20, nmiss = NULL,
nm.edges = FALSE)
Arguments
positions
Vector of positions
gapsize
Maximum gap to allow between data points in a window
mindata
Minimum number of data points per window
nmiss
If nm.edges=TRUE provide a vector listing the number
of missing points at each position.
nm.edges
Make sure the last data point in each window is non-missing in all samples
Value
A list with elements counts, reads, pos, probs, and sds.
jean997/jadeTF documentation built on May 18, 2019, 11:44 p.m.
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Description Usage Arguments Value
Description
Find window boundaries for methylation data
Usage
1 2 | methylation_windows(positions, gapsize = 2000, mindata = 20, nmiss = NULL,
nm.edges = FALSE)
|
Arguments
positions |
Vector of positions |
gapsize |
Maximum gap to allow between data points in a window |
mindata |
Minimum number of data points per window |
nmiss |
If nm.edges=TRUE provide a vector listing the number of missing points at each position. |
nm.edges |
Make sure the last data point in each window is non-missing in all samples |
Value
A list with elements counts, reads, pos, probs, and sds.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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