get_separated_regions: Get a table of separated regions.
In jean997/jadeTF:
Description
Usage
Arguments
Value
Description
Get a table of separated regions.
Usage
1
2
get_separated_regions(fit, which.window = 1, chr = "chr22",
new.tol = NULL, min.gapwidth = 2, min.width = 1)
Arguments
fit
A JADE fit.
which.window,chr
Will be put in the table. Can be useful for writing other files.
new.tol
Recalculate separation using a different tolerance.
min.gapwidth
Merge regions separated by fewer than this many sites
min.width
Report regions spanning at least this many sites.
Value
A list of two tables of separated regions.
One of the tables is merged over partition types, the other is not.
Returns 0 if all profiles are fused or only. These tables ca be passed
to the plot_jade function in sep.tab argument.
separated at singleton sites.
jean997/jadeTF documentation built on May 18, 2019, 11:44 p.m.
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Description Usage Arguments Value
Description
Get a table of separated regions.
Usage
1 2 | get_separated_regions(fit, which.window = 1, chr = "chr22",
new.tol = NULL, min.gapwidth = 2, min.width = 1)
|
Arguments
fit |
A JADE fit. |
which.window,chr |
Will be put in the table. Can be useful for writing other files. |
new.tol |
Recalculate separation using a different tolerance. |
min.gapwidth |
Merge regions separated by fewer than this many sites |
min.width |
Report regions spanning at least this many sites. |
Value
A list of two tables of separated regions.
One of the tables is merged over partition types, the other is not.
Returns 0 if all profiles are fused or only. These tables ca be passed
to the plot_jade function in sep.tab argument.
separated at singleton sites.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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