Files in jedick/JMDplots
Plots from Papers by Jeffrey M. Dick
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/DGtr.R
R/MaximAct.R
R/PS.R
R/aaaq.R
R/aoscp.R
R/bison.R
R/canH2O.R
R/carrollite.R
R/chem16S.R
R/chnosz10.R
R/cpcp.R
R/devodata.R
R/diffexpr.R
R/dunnTest.R
R/evdevH2O.R
R/genoGOE.R
R/geo16S.R
R/gradH2O.R
R/grad_mdata.R
R/grad_mplot.R
R/grad_util.R
R/gradox.R
R/microhum.R
R/microhum_util.R
R/mjenergy.R
R/orp16S.R
R/orp16S_util.R
R/pdat_.R
R/pdat_3D.R
R/pdat_breast.R
R/pdat_colorectal.R
R/pdat_glucose.R
R/pdat_hypoxia.R
R/pdat_liver.R
R/pdat_lung.R
R/pdat_multi.R
R/pdat_osmotic.R
R/pdat_osmotic_bact.R
R/pdat_osmotic_euk.R
R/pdat_osmotic_gene.R
R/pdat_osmotic_halo.R
R/pdat_pancreatic.R
R/pdat_prostate.R
R/pdat_secreted.R
R/plot_starburst.R
R/scsc.R
R/utils.R
R/utogig.R
R/yeast.R
R/zzz.R
README.md
demo/00Index
demo/HPA.R
demo/TCGA.R
demo/X3D.R
demo/breast.R
demo/bugstab.R
demo/colorectal.R
demo/evdevH2O.R
demo/glucose.R
demo/hypoxia.R
demo/liver.R
demo/lung.R
demo/osmotic_bact.R
demo/osmotic_euk.R
demo/osmotic_gene.R
demo/osmotic_halo.R
demo/pancreatic.R
demo/prostate.R
demo/secreted.R
inst/NEWS
inst/RefDB/GTDB_220/genome_AA.csv.xz
inst/RefDB/GTDB_220/taxonomy.csv.xz
inst/RefDB/RefSeq_206/genome_AA.csv.xz
inst/RefDB/RefSeq_206/taxon_metrics.R
inst/RefDB/RefSeq_206/taxon_metrics.csv.xz
inst/RefDB/RefSeq_206/taxonomy.csv.xz
inst/RefDB/UHGG_2.0.1/MGnify_genomes.csv
inst/RefDB/UHGG_2.0.1/fullset/genome_AA.csv.xz
inst/RefDB/UHGG_2.0.1/fullset/taxon_AA.csv.xz
inst/RefDB/UHGG_2.0.1/fullset/taxonomy.csv.xz
inst/RefDB/UHGG_2.0.1/genome_AA.R
inst/RefDB/UHGG_2.0.1/genome_AA.csv.xz
inst/RefDB/UHGG_2.0.1/getMGnify.R
inst/RefDB/UHGG_2.0.1/taxon_AA.R
inst/RefDB/UHGG_2.0.1/taxon_AA.csv.xz
inst/RefDB/UHGG_2.0.1/taxonomy.csv.xz
inst/RefDB/organisms/Sce.csv.xz
inst/RefDB/organisms/UP000000625_83333.csv.xz
inst/RefDB/organisms/UP000000803_7227.csv.xz
inst/RefDB/organisms/UP000000805_243232.csv.xz
inst/RefDB/organisms/UP000001570_224308.csv.xz
inst/RefDB/organisms/yeastgfp.csv.xz
inst/diffexpr/3D.Rmd
inst/diffexpr/3D.csv
inst/diffexpr/3D.html
inst/diffexpr/HPA.Rmd
inst/diffexpr/HPA.csv
inst/diffexpr/HPA.html
inst/diffexpr/TCGA.Rmd
inst/diffexpr/TCGA.csv
inst/diffexpr/TCGA.html
inst/diffexpr/breast.Rmd
inst/diffexpr/breast.csv
inst/diffexpr/breast.html
inst/diffexpr/colorectal.Rmd
inst/diffexpr/colorectal.csv
inst/diffexpr/colorectal.html
inst/diffexpr/cpdat.bib
inst/diffexpr/glucose.Rmd
inst/diffexpr/glucose.csv
inst/diffexpr/glucose.html
inst/diffexpr/hypoxia.Rmd
inst/diffexpr/hypoxia.csv
inst/diffexpr/hypoxia.html
inst/diffexpr/liver.Rmd
inst/diffexpr/liver.csv
inst/diffexpr/liver.html
inst/diffexpr/lung.Rmd
inst/diffexpr/lung.csv
inst/diffexpr/lung.html
inst/diffexpr/mkall.R
inst/diffexpr/osmotic_bact.Rmd
inst/diffexpr/osmotic_bact.csv
inst/diffexpr/osmotic_bact.html
inst/diffexpr/osmotic_euk.Rmd
inst/diffexpr/osmotic_euk.csv
inst/diffexpr/osmotic_euk.html
inst/diffexpr/osmotic_gene.Rmd
inst/diffexpr/osmotic_gene.bib
inst/diffexpr/osmotic_gene.csv
inst/diffexpr/osmotic_gene.html
inst/diffexpr/osmotic_halo.Rmd
inst/diffexpr/osmotic_halo.csv
inst/diffexpr/osmotic_halo.html
inst/diffexpr/pancreatic.Rmd
inst/diffexpr/pancreatic.csv
inst/diffexpr/pancreatic.html
inst/diffexpr/peerj.csl
inst/diffexpr/prostate.Rmd
inst/diffexpr/prostate.csv
inst/diffexpr/prostate.html
inst/diffexpr/secreted.Rmd
inst/diffexpr/secreted.csv
inst/diffexpr/secreted.html
inst/diffexpr/yeast_stress.Rmd
inst/diffexpr/yeast_stress.csv
inst/diffexpr/yeast_stress.html
inst/doc/aaaq.html
inst/doc/aoscp.html
inst/doc/bison.html
inst/doc/canH2O.html
inst/doc/carrollite.html
inst/doc/chem16S.html
inst/doc/chnosz10.html
inst/doc/chnosz10_SI.html
inst/doc/cpcp.html
inst/doc/evdevH2O.html
inst/doc/genoGOE.html
inst/doc/geo16S.html
inst/doc/gradH2O.html
inst/doc/gradox.html
inst/doc/microhum.html
inst/doc/mjenergy.html
inst/doc/orp16S.bib
inst/doc/orp16S.html
inst/doc/scsc.html
inst/doc/utogig.html
inst/extdata/Dic16/microbes.csv
inst/extdata/Dic16/microbial.aa.csv
inst/extdata/OBIGT/OldAA.csv
inst/extdata/OBIGT/refs.csv
inst/extdata/aa/archaea/JSP+19_aa.csv.xz
inst/extdata/aa/archaea/LRB+09_aa.csv.xz
inst/extdata/aa/bacteria/ADW+14_aa.csv.xz
inst/extdata/aa/bacteria/AST+20_aa.csv.xz
inst/extdata/aa/bacteria/BBWB12_aa.csv.xz
inst/extdata/aa/bacteria/FRH+15_aa.csv.xz
inst/extdata/aa/bacteria/FTR+10_aa.csv.xz
inst/extdata/aa/bacteria/GBR+20_aa.csv.xz
inst/extdata/aa/bacteria/GCP08_aa.csv.xz
inst/extdata/aa/bacteria/HGC+18_aa.csv.xz
inst/extdata/aa/bacteria/HLL17_aa.csv.xz
inst/extdata/aa/bacteria/HMO+10_aa.csv.xz
inst/extdata/aa/bacteria/HZP+05_aa.csv.xz
inst/extdata/aa/bacteria/KAK+17_aa.csv.xz
inst/extdata/aa/bacteria/KKG+12_aa.csv.xz
inst/extdata/aa/bacteria/KKG+14_aa.csv.xz
inst/extdata/aa/bacteria/KLB+15_aa.csv.xz
inst/extdata/aa/bacteria/KSA+02_aa.csv.xz
inst/extdata/aa/bacteria/KSK+18_aa.csv.xz
inst/extdata/aa/bacteria/KSM+14_aa.csv.xz
inst/extdata/aa/bacteria/LB12_aa.csv.xz
inst/extdata/aa/bacteria/LGW+05_aa.csv.xz
inst/extdata/aa/bacteria/LJC+18_aa.csv.xz
inst/extdata/aa/bacteria/LLYL17_aa.csv.xz
inst/extdata/aa/bacteria/LPK+13_aa.csv.xz
inst/extdata/aa/bacteria/LWS+19_aa.csv.xz
inst/extdata/aa/bacteria/LYS+17_aa.csv.xz
inst/extdata/aa/bacteria/MGF+19_aa.csv.xz
inst/extdata/aa/bacteria/MGM+14_aa.csv.xz
inst/extdata/aa/bacteria/MWZ+18_aa.csv.xz
inst/extdata/aa/bacteria/PBP+14_aa.csv.xz
inst/extdata/aa/bacteria/PNWB09_aa.csv.xz
inst/extdata/aa/bacteria/QHT+13_aa.csv.xz
inst/extdata/aa/bacteria/SBB+09_aa.csv.xz
inst/extdata/aa/bacteria/SKV+16_aa.csv.xz
inst/extdata/aa/bacteria/SLA+05_aa.csv.xz
inst/extdata/aa/bacteria/SLM+14_aa.csv.xz
inst/extdata/aa/bacteria/TSC18_aa.csv.xz
inst/extdata/aa/bacteria/WGB+13_aa.csv.xz
inst/extdata/aa/bacteria/WJ02_aa.csv.xz
inst/extdata/aa/bacteria/ZLZ+16_aa.csv.xz
inst/extdata/aa/cow/WFSL09_aa.csv.xz
inst/extdata/aa/dog/SPJ+20_aa.csv.xz
inst/extdata/aa/fly/FKL+19_aa.csv
inst/extdata/aa/human/CWG+19_aa.csv.xz
inst/extdata/aa/human/SCL+20_aa.csv.xz
inst/extdata/aa/mouse/BEM+20_aa.csv.xz
inst/extdata/aa/mouse/BHB+15_aa.csv.xz
inst/extdata/aa/mouse/BSG15_aa.csv.xz
inst/extdata/aa/mouse/CGH+17_aa.csv.xz
inst/extdata/aa/mouse/DAA+05_aa.csv.xz
inst/extdata/aa/mouse/DCH+14_aa.csv.xz
inst/extdata/aa/mouse/JCP+16_aa.csv.xz
inst/extdata/aa/mouse/KKC+16_aa.csv.xz
inst/extdata/aa/mouse/LAR+12_aa.csv.xz
inst/extdata/aa/mouse/LDB+15_aa.csv.xz
inst/extdata/aa/mouse/LPK+19_aa.csv.xz
inst/extdata/aa/mouse/MHN+08_aa.csv.xz
inst/extdata/aa/mouse/MZH+14_aa.csv.xz
inst/extdata/aa/mouse/PDT+19_aa.csv.xz
inst/extdata/aa/mouse/SBB+06_aa.csv.xz
inst/extdata/aa/mouse/SFKD17_aa.csv.xz
inst/extdata/aa/mouse/WCM+09_aa.csv.xz
inst/extdata/aa/mouse/ZKL+20_aa.csv.xz
inst/extdata/aa/rat/CCW+13_aa.csv.xz
inst/extdata/aa/rat/DPL+10_aa.csv.xz
inst/extdata/aa/rat/LRS+14_aa.csv.xz
inst/extdata/aa/rat/MFD+10_aa.csv.xz
inst/extdata/aa/rat/MHP+20_aa.csv.xz
inst/extdata/aa/rat/RLA+10_aa.csv.xz
inst/extdata/aa/rat/XCJ+16_aa.csv.xz
inst/extdata/aa/uniprot_updates.csv
inst/extdata/aa/yeast/GSC14_aa.csv.xz
inst/extdata/aa/yeast/GSK+00_aa.csv.xz
inst/extdata/aa/yeast/JBG+18_aa.csv.xz
inst/extdata/aa/yeast/LTH+11_aa.csv.xz
inst/extdata/aa/yeast/PW08_aa.csv.xz
inst/extdata/aa/yeast/RBP+16_aa.csv.xz
inst/extdata/aa/yeast/SCG+15_aa.csv.xz
inst/extdata/aa/yeast/TNC+19_aa.csv.xz
inst/extdata/aa/yeast/YDZ+15_aa.csv.xz
inst/extdata/aaaq/BKM60_Fig7.csv
inst/extdata/aaaq/NT67.csv
inst/extdata/aaaq/RT71.csv
inst/extdata/aaaq/WG00.csv
inst/extdata/aoscp/SGD_associations.csv.xz
inst/extdata/aoscp/Zc_HUMAN.csv.xz
inst/extdata/aoscp/Zc_membrane.csv.xz
inst/extdata/aoscp/Zc_refseq.csv.xz
inst/extdata/aoscp/cell/ER.membrane.png
inst/extdata/aoscp/cell/ER.png
inst/extdata/aoscp/cell/Golgi.membrane.png
inst/extdata/aoscp/cell/Golgi.png
inst/extdata/aoscp/cell/bud.neck.png
inst/extdata/aoscp/cell/bud.png
inst/extdata/aoscp/cell/cytoplasm.png
inst/extdata/aoscp/cell/extracellular.png
inst/extdata/aoscp/cell/inner.membrane.png
inst/extdata/aoscp/cell/mitochondrion.png
inst/extdata/aoscp/cell/nuclear.membrane.png
inst/extdata/aoscp/cell/nucleolus.png
inst/extdata/aoscp/cell/nucleus.png
inst/extdata/aoscp/cell/outer.membrane.png
inst/extdata/aoscp/cell/outline.png
inst/extdata/aoscp/cell/plasma.membrane.png
inst/extdata/aoscp/cell/vacuolar.membrane.png
inst/extdata/aoscp/cell/vacuole.png
inst/extdata/aoscp/codons.csv
inst/extdata/aoscp/prep.R
inst/extdata/aoscp/rubisco.csv
inst/extdata/aoscp/rubisco/A0B9K9.fasta
inst/extdata/aoscp/rubisco/A1RZJ5.fasta
inst/extdata/aoscp/rubisco/A3DND9.fasta
inst/extdata/aoscp/rubisco/A8F7V4.fasta
inst/extdata/aoscp/rubisco/B9KXE5.fasta
inst/extdata/aoscp/rubisco/F8IID7.fasta
inst/extdata/aoscp/rubisco/F9ZLP0.fasta
inst/extdata/aoscp/rubisco/G8LZL2.fasta
inst/extdata/aoscp/rubisco/G9FID8.fasta
inst/extdata/aoscp/rubisco/K4MAK9.fasta
inst/extdata/aoscp/rubisco/L0RHZ1.fasta
inst/extdata/aoscp/rubisco/M9R7V1.fasta
inst/extdata/aoscp/rubisco/O28635.fasta
inst/extdata/aoscp/rubisco/O58677.fasta
inst/extdata/aoscp/rubisco/P00874.fasta
inst/extdata/aoscp/rubisco/P0C916.fasta
inst/extdata/aoscp/rubisco/P37393.fasta
inst/extdata/aoscp/rubisco/P72383.fasta
inst/extdata/aoscp/rubisco/Q0EX22.fasta
inst/extdata/aoscp/rubisco/Q12TQ0.fasta
inst/extdata/aoscp/rubisco/Q2JIP3.fasta
inst/extdata/aoscp/rubisco/Q51856.fasta
inst/extdata/aoscp/rubisco/Q58632.fasta
inst/extdata/aoscp/rubisco/Q8DIS5.fasta
inst/extdata/aoscp/rubisco/Q8THG2.fasta
inst/extdata/aoscp/rubisco/Q8U1P9.fasta
inst/extdata/aoscp/rubisco/Q9ZI34.fasta
inst/extdata/bison/DS11.csv
inst/extdata/bison/DS13.csv
inst/extdata/cpcp/colorectal.Rmd
inst/extdata/cpcp/colorectal.csv
inst/extdata/cpcp/data_sources.bib
inst/extdata/cpcp/hyperosmotic.Rmd
inst/extdata/cpcp/hyperosmotic.csv
inst/extdata/cpcp/hypoxia.Rmd
inst/extdata/cpcp/hypoxia.csv
inst/extdata/cpcp/mkall.R
inst/extdata/cpcp/pancreatic.Rmd
inst/extdata/cpcp/pancreatic.csv
inst/extdata/cpcp/summary/mksummary.R
inst/extdata/cpcp/summary/summary_colorectal.csv
inst/extdata/cpcp/summary/summary_hypoxia.csv
inst/extdata/cpcp/summary/summary_osmotic.csv
inst/extdata/cpcp/summary/summary_pancreatic.csv
inst/extdata/diffexpr/3D/DKM+20.csv.xz
inst/extdata/diffexpr/3D/EWK+19.csv.xz
inst/extdata/diffexpr/3D/GADS19.csv.xz
inst/extdata/diffexpr/3D/HKX+14.csv.xz
inst/extdata/diffexpr/3D/HLC19.csv.xz
inst/extdata/diffexpr/3D/KDS+14.csv.xz
inst/extdata/diffexpr/3D/KJK+18.csv.xz
inst/extdata/diffexpr/3D/LPK+19.csv.xz
inst/extdata/diffexpr/3D/MHG+12.csv.xz
inst/extdata/diffexpr/3D/MTK+15.csv.xz
inst/extdata/diffexpr/3D/MVC+12.csv.xz
inst/extdata/diffexpr/3D/PLC+10.csv.xz
inst/extdata/diffexpr/3D/RKP+14.csv.xz
inst/extdata/diffexpr/3D/SAS+14.csv.xz
inst/extdata/diffexpr/3D/TGD18.csv.xz
inst/extdata/diffexpr/3D/WRK+14.csv.xz
inst/extdata/diffexpr/3D/YLW+16.csv.xz
inst/extdata/diffexpr/3D/YYW+13.csv.xz
inst/extdata/diffexpr/3D/ZMH+13.csv.xz
inst/extdata/diffexpr/aneuploidy/TNC+19.csv.xz
inst/extdata/diffexpr/breast/AMG+08.csv.xz
inst/extdata/diffexpr/breast/BST+17.csv.xz
inst/extdata/diffexpr/breast/CIR+10.csv.xz
inst/extdata/diffexpr/breast/CVJ+15.csv.xz
inst/extdata/diffexpr/breast/GCS+19.csv.xz
inst/extdata/diffexpr/breast/GSB+14.csv.xz
inst/extdata/diffexpr/breast/GTM+12.csv.xz
inst/extdata/diffexpr/breast/HTP+11.csv.xz
inst/extdata/diffexpr/breast/LLC+19.csv.xz
inst/extdata/diffexpr/breast/LLF+20.csv.xz
inst/extdata/diffexpr/breast/LLL+13.csv.xz
inst/extdata/diffexpr/breast/PBR+16.csv.xz
inst/extdata/diffexpr/breast/PGT+16.csv.xz
inst/extdata/diffexpr/breast/PPH+14.csv.xz
inst/extdata/diffexpr/breast/SRG+10.csv.xz
inst/extdata/diffexpr/breast/SRS+13.csv.xz
inst/extdata/diffexpr/breast/TZD+18.csv.xz
inst/extdata/diffexpr/colorectal/AKG+18.csv.xz
inst/extdata/diffexpr/colorectal/AKP+10.csv.xz
inst/extdata/diffexpr/colorectal/BPV+11.csv.xz
inst/extdata/diffexpr/colorectal/CTW+17.csv.xz
inst/extdata/diffexpr/colorectal/CZD+14.csv.xz
inst/extdata/diffexpr/colorectal/FGW+12.csv.xz
inst/extdata/diffexpr/colorectal/HZW+17.csv.xz
inst/extdata/diffexpr/colorectal/JCF+11.csv.xz
inst/extdata/diffexpr/colorectal/JKMF10.csv.xz
inst/extdata/diffexpr/colorectal/KKL+12.csv.xz
inst/extdata/diffexpr/colorectal/KWA+14.csv.xz
inst/extdata/diffexpr/colorectal/KYK+12.csv.xz
inst/extdata/diffexpr/colorectal/LLL+17.csv.xz
inst/extdata/diffexpr/colorectal/LPL+16.csv.xz
inst/extdata/diffexpr/colorectal/LXM+16.csv.xz
inst/extdata/diffexpr/colorectal/MCZ+13.csv.xz
inst/extdata/diffexpr/colorectal/MRK+11.csv.xz
inst/extdata/diffexpr/colorectal/NKG+17.csv.xz
inst/extdata/diffexpr/colorectal/PHL+16.csv.xz
inst/extdata/diffexpr/colorectal/QMB+17.csv.xz
inst/extdata/diffexpr/colorectal/SHHS11.csv.xz
inst/extdata/diffexpr/colorectal/STA+19.csv.xz
inst/extdata/diffexpr/colorectal/STK+15.csv.xz
inst/extdata/diffexpr/colorectal/TMS+17.csv.xz
inst/extdata/diffexpr/colorectal/UNS+14.csv.xz
inst/extdata/diffexpr/colorectal/VHW+19.csv.xz
inst/extdata/diffexpr/colorectal/WDO+15.csv.xz
inst/extdata/diffexpr/colorectal/WKP+14.csv.xz
inst/extdata/diffexpr/colorectal/WOD+12.csv.xz
inst/extdata/diffexpr/colorectal/WTK+08.csv.xz
inst/extdata/diffexpr/colorectal/WYL+19.csv.xz
inst/extdata/diffexpr/colorectal/XZC+10.csv.xz
inst/extdata/diffexpr/colorectal/YLZ+12.csv.xz
inst/extdata/diffexpr/colorectal/ZLY+17.csv.xz
inst/extdata/diffexpr/colorectal/ZYS+10.csv.xz
inst/extdata/diffexpr/development/FKL+19.csv
inst/extdata/diffexpr/glucose/BTX+17.csv.xz
inst/extdata/diffexpr/glucose/CCC+12.csv.xz
inst/extdata/diffexpr/glucose/CCCC13.csv.xz
inst/extdata/diffexpr/glucose/CCW+13.csv.xz
inst/extdata/diffexpr/glucose/GSC14.csv.xz
inst/extdata/diffexpr/glucose/IXA+19.csv.xz
inst/extdata/diffexpr/glucose/LDB+15.csv.xz
inst/extdata/diffexpr/glucose/MFD+10.csv.xz
inst/extdata/diffexpr/glucose/MHP+20.csv.xz
inst/extdata/diffexpr/glucose/MPR+20.csv.xz
inst/extdata/diffexpr/glucose/PW08.csv.xz
inst/extdata/diffexpr/glucose/SFG+12.csv.xz
inst/extdata/diffexpr/glucose/SFKD17.csv.xz
inst/extdata/diffexpr/glucose/WCM+09.csv.xz
inst/extdata/diffexpr/glucose/WFSL09.csv.xz
inst/extdata/diffexpr/halophiles/JSP+19.csv.xz
inst/extdata/diffexpr/halophiles/LLYL17.csv.xz
inst/extdata/diffexpr/halophiles/LRB+09.csv.xz
inst/extdata/diffexpr/halophiles/ZLZ+16.csv.xz
inst/extdata/diffexpr/hypoxia/BCMS20.csv.xz
inst/extdata/diffexpr/hypoxia/BMJ+11.csv.xz
inst/extdata/diffexpr/hypoxia/BSA+15.csv.xz
inst/extdata/diffexpr/hypoxia/CBW+11.csv.xz
inst/extdata/diffexpr/hypoxia/CSK+19.csv.xz
inst/extdata/diffexpr/hypoxia/DCH+14.csv.xz
inst/extdata/diffexpr/hypoxia/DPL+10.csv.xz
inst/extdata/diffexpr/hypoxia/DYL+14.csv.xz
inst/extdata/diffexpr/hypoxia/FWH+13.csv.xz
inst/extdata/diffexpr/hypoxia/GBH+18.csv.xz
inst/extdata/diffexpr/hypoxia/GPT+19.csv.xz
inst/extdata/diffexpr/hypoxia/HWA+16.csv.xz
inst/extdata/diffexpr/hypoxia/HXS+06.csv.xz
inst/extdata/diffexpr/hypoxia/LAR+12.csv.xz
inst/extdata/diffexpr/hypoxia/LCS16.csv.xz
inst/extdata/diffexpr/hypoxia/LKK+18.csv.xz
inst/extdata/diffexpr/hypoxia/LLL+19.csv.xz
inst/extdata/diffexpr/hypoxia/RHD+13.csv.xz
inst/extdata/diffexpr/hypoxia/RVN+20.csv.xz
inst/extdata/diffexpr/hypoxia/SBB+06.csv.xz
inst/extdata/diffexpr/hypoxia/SPJ+20.csv.xz
inst/extdata/diffexpr/hypoxia/VTMF13.csv.xz
inst/extdata/diffexpr/hypoxia/WTG+18.csv.xz
inst/extdata/diffexpr/hypoxia/XCJ+16.csv.xz
inst/extdata/diffexpr/hypoxia/ZXS+17.csv.xz
inst/extdata/diffexpr/liver/BEM+20.csv.xz
inst/extdata/diffexpr/liver/BLP+05.csv.xz
inst/extdata/diffexpr/liver/BOK+18.csv.xz
inst/extdata/diffexpr/liver/BSG15.csv.xz
inst/extdata/diffexpr/liver/CHN+08.csv.xz
inst/extdata/diffexpr/liver/DTS+07.csv.xz
inst/extdata/diffexpr/liver/GJZ+17.csv.xz
inst/extdata/diffexpr/liver/GWS+17.csv.xz
inst/extdata/diffexpr/liver/GZD+19.csv.xz
inst/extdata/diffexpr/liver/GZL+20.csv.xz
inst/extdata/diffexpr/liver/JSZ+19.csv.xz
inst/extdata/diffexpr/liver/KOK+13.csv.xz
inst/extdata/diffexpr/liver/LHT+04.csv.xz
inst/extdata/diffexpr/liver/LMG+11.csv.xz
inst/extdata/diffexpr/liver/LRL+12.csv.xz
inst/extdata/diffexpr/liver/LTZ+05.csv.xz
inst/extdata/diffexpr/liver/MBK+13.csv.xz
inst/extdata/diffexpr/liver/NBM+16.csv.xz
inst/extdata/diffexpr/liver/NMB+16.csv.xz
inst/extdata/diffexpr/liver/QPP+17.csv.xz
inst/extdata/diffexpr/liver/QXC+16.csv.xz
inst/extdata/diffexpr/liver/RLA+10.csv.xz
inst/extdata/diffexpr/liver/RPM+15.csv.xz
inst/extdata/diffexpr/liver/SCL+20.csv.xz
inst/extdata/diffexpr/liver/SXS+07.csv.xz
inst/extdata/diffexpr/liver/WLL+17.csv.xz
inst/extdata/diffexpr/liver/XWS+14.csv.xz
inst/extdata/diffexpr/liver/YXZ+18.csv.xz
inst/extdata/diffexpr/liver/ZZL+19.csv.xz
inst/extdata/diffexpr/lung/BLL+16.csv.xz
inst/extdata/diffexpr/lung/FGP+16.csv.xz
inst/extdata/diffexpr/lung/FGW+17.csv.xz
inst/extdata/diffexpr/lung/HHH+16.csv.xz
inst/extdata/diffexpr/lung/JCP+16.csv.xz
inst/extdata/diffexpr/lung/KHA+12.csv.xz
inst/extdata/diffexpr/lung/KNT+15.csv.xz
inst/extdata/diffexpr/lung/KPS+20.csv.xz
inst/extdata/diffexpr/lung/LLY+14.csv.xz
inst/extdata/diffexpr/lung/LWT+14.csv.xz
inst/extdata/diffexpr/lung/LXC+06.csv.xz
inst/extdata/diffexpr/lung/LZW+17.csv.xz
inst/extdata/diffexpr/lung/SFS+17.csv.xz
inst/extdata/diffexpr/lung/TLB+16.csv.xz
inst/extdata/diffexpr/lung/WLC+17.csv.xz
inst/extdata/diffexpr/lung/XZW+20.csv.xz
inst/extdata/diffexpr/lung/YCC+17.csv.xz
inst/extdata/diffexpr/lung/YLL+12.csv.xz
inst/extdata/diffexpr/lung/ZLH+14.csv.xz
inst/extdata/diffexpr/lung/ZLS+14.csv.xz
inst/extdata/diffexpr/lung/ZZD+12.csv.xz
inst/extdata/diffexpr/lung/ZZY+13.csv.xz
inst/extdata/diffexpr/multi/CGH+17.csv.xz
inst/extdata/diffexpr/multi/CLY+18.csv.xz
inst/extdata/diffexpr/multi/KAN+19.csv.xz
inst/extdata/diffexpr/osmotic/ADW+14.csv.xz
inst/extdata/diffexpr/osmotic/AST+20.csv.xz
inst/extdata/diffexpr/osmotic/CLG+15.csv.xz
inst/extdata/diffexpr/osmotic/DAA+05.csv.xz
inst/extdata/diffexpr/osmotic/FTR+10.csv.xz
inst/extdata/diffexpr/osmotic/GAM+16.csv.xz
inst/extdata/diffexpr/osmotic/GBR+20.csv.xz
inst/extdata/diffexpr/osmotic/HGC+18.csv.xz
inst/extdata/diffexpr/osmotic/JBG+18.csv.xz
inst/extdata/diffexpr/osmotic/KAK+17.csv.xz
inst/extdata/diffexpr/osmotic/KKG+12.csv.xz
inst/extdata/diffexpr/osmotic/KKG+14.csv.xz
inst/extdata/diffexpr/osmotic/KLB+15.csv.xz
inst/extdata/diffexpr/osmotic/KSK+18.csv.xz
inst/extdata/diffexpr/osmotic/LFY+12.csv.xz
inst/extdata/diffexpr/osmotic/LJC+18.csv.xz
inst/extdata/diffexpr/osmotic/LPK+13.csv.xz
inst/extdata/diffexpr/osmotic/LTH+11.csv.xz
inst/extdata/diffexpr/osmotic/LWS+19.csv.xz
inst/extdata/diffexpr/osmotic/LYS+17.csv.xz
inst/extdata/diffexpr/osmotic/MGF+19.csv.xz
inst/extdata/diffexpr/osmotic/MHN+08.csv.xz
inst/extdata/diffexpr/osmotic/OBBH11.csv.xz
inst/extdata/diffexpr/osmotic/PBP+14.csv.xz
inst/extdata/diffexpr/osmotic/PNWB09.csv.xz
inst/extdata/diffexpr/osmotic/QHT+13.csv.xz
inst/extdata/diffexpr/osmotic/RBP+16.csv.xz
inst/extdata/diffexpr/osmotic/SCG+15.csv.xz
inst/extdata/diffexpr/osmotic/SKV+16.csv.xz
inst/extdata/diffexpr/osmotic/TSC18.csv.xz
inst/extdata/diffexpr/osmotic/TSZ+13.csv.xz
inst/extdata/diffexpr/osmotic/YDZ+15.csv.xz
inst/extdata/diffexpr/osmotic_gene/BBWB12.csv.xz
inst/extdata/diffexpr/osmotic_gene/FRH+15.csv.xz
inst/extdata/diffexpr/osmotic_gene/GCP08.csv.xz
inst/extdata/diffexpr/osmotic_gene/HLL17.csv.xz
inst/extdata/diffexpr/osmotic_gene/HMO+10.csv.xz
inst/extdata/diffexpr/osmotic_gene/HZP+05.csv.xz
inst/extdata/diffexpr/osmotic_gene/KSA+02.csv.xz
inst/extdata/diffexpr/osmotic_gene/KSM+14.csv.xz
inst/extdata/diffexpr/osmotic_gene/LB12.csv.xz
inst/extdata/diffexpr/osmotic_gene/LGW+05.csv.xz
inst/extdata/diffexpr/osmotic_gene/MGM+14.csv.xz
inst/extdata/diffexpr/osmotic_gene/MWZ+18.csv.xz
inst/extdata/diffexpr/osmotic_gene/SBB+09.csv.xz
inst/extdata/diffexpr/osmotic_gene/SLA+05.csv.xz
inst/extdata/diffexpr/osmotic_gene/SLM+14.csv.xz
inst/extdata/diffexpr/osmotic_gene/WGB+13.csv.xz
inst/extdata/diffexpr/osmotic_gene/WJ02.csv.xz
inst/extdata/diffexpr/pancan/GEPIA2.csv.xz
inst/extdata/diffexpr/pancan/HPA19.csv.xz
inst/extdata/diffexpr/pancreatic/BHB+15.csv.xz
inst/extdata/diffexpr/pancreatic/BZQ+14.csv.xz
inst/extdata/diffexpr/pancreatic/CBP+07.csv.xz
inst/extdata/diffexpr/pancreatic/CGB+05.csv.xz
inst/extdata/diffexpr/pancreatic/CHO+18.csv.xz
inst/extdata/diffexpr/pancreatic/CTZ+09.csv.xz
inst/extdata/diffexpr/pancreatic/CYD+05.csv.xz
inst/extdata/diffexpr/pancreatic/ISI+14.csv.xz
inst/extdata/diffexpr/pancreatic/KBK+12.csv.xz
inst/extdata/diffexpr/pancreatic/KHO+13.csv.xz
inst/extdata/diffexpr/pancreatic/KKC+16.csv.xz
inst/extdata/diffexpr/pancreatic/KPC+13.csv.xz
inst/extdata/diffexpr/pancreatic/LHE+04.csv.xz
inst/extdata/diffexpr/pancreatic/MLC+11.csv.xz
inst/extdata/diffexpr/pancreatic/MZH+14.csv.xz
inst/extdata/diffexpr/pancreatic/PCS+11.csv.xz
inst/extdata/diffexpr/pancreatic/PKB+13.csv.xz
inst/extdata/diffexpr/pancreatic/SWW+18.csv.xz
inst/extdata/diffexpr/pancreatic/TMW+11.csv.xz
inst/extdata/diffexpr/pancreatic/WLL+13.csv.xz
inst/extdata/diffexpr/pancreatic/WLL+13a.csv.xz
inst/extdata/diffexpr/pancreatic/YKK+13.csv.xz
inst/extdata/diffexpr/pancreatic/ZAH+19.csv.xz
inst/extdata/diffexpr/pancreatic/ZNWL13.csv.xz
inst/extdata/diffexpr/prostate/CZL+16.csv.xz
inst/extdata/diffexpr/prostate/GLZ+18.csv.xz
inst/extdata/diffexpr/prostate/GTR+08.csv.xz
inst/extdata/diffexpr/prostate/HZH+12.csv.xz
inst/extdata/diffexpr/prostate/IWT+16.csv.xz
inst/extdata/diffexpr/prostate/JHZ+13.csv.xz
inst/extdata/diffexpr/prostate/KHN+20.csv.xz
inst/extdata/diffexpr/prostate/KPB+10.csv.xz
inst/extdata/diffexpr/prostate/KRN+19.csv.xz
inst/extdata/diffexpr/prostate/LAJ+18.csv.xz
inst/extdata/diffexpr/prostate/LCS+14.csv.xz
inst/extdata/diffexpr/prostate/LDM+20.csv.xz
inst/extdata/diffexpr/prostate/MAN+18.csv.xz
inst/extdata/diffexpr/prostate/MMF+20.csv.xz
inst/extdata/diffexpr/prostate/SHC+20.csv.xz
inst/extdata/diffexpr/prostate/TOT+19.csv.xz
inst/extdata/diffexpr/prostate/ZKL+20.csv.xz
inst/extdata/diffexpr/prostate/ZYW+19.csv.xz
inst/extdata/diffexpr/prostate/ZZX+20.csv.xz
inst/extdata/diffexpr/secreted/BRA+10.csv.xz
inst/extdata/diffexpr/secreted/CRS+15.csv.xz
inst/extdata/diffexpr/secreted/CWG+19.csv.xz
inst/extdata/diffexpr/secreted/DWW+18.csv.xz
inst/extdata/diffexpr/secreted/FPR+18.csv.xz
inst/extdata/diffexpr/secreted/JVC+12.csv.xz
inst/extdata/diffexpr/secreted/LRS+14.csv.xz
inst/extdata/diffexpr/secreted/NJVS19.csv.xz
inst/extdata/diffexpr/secreted/ODS+18.csv.xz
inst/extdata/diffexpr/secreted/PDT+19.csv.xz
inst/extdata/diffexpr/secreted/PTD+10.csv.xz
inst/extdata/diffexpr/secreted/RSE+16.csv.xz
inst/extdata/diffexpr/secreted/RTA+15.csv.xz
inst/extdata/diffexpr/secreted/SKA+13.csv.xz
inst/extdata/diffexpr/secreted/SRS+13a.csv.xz
inst/extdata/diffexpr/secreted/YKK+14.csv.xz
inst/extdata/diffexpr/uniprot_updates.csv
inst/extdata/diffexpr/yeast_stress/GSK+00.csv.xz
inst/extdata/evdevH2O/JWN+21/mkAA.R
inst/extdata/evdevH2O/JWN+21/pfam_animal_nontrans_AA.csv.xz
inst/extdata/evdevH2O/JWN+21/pfam_animal_trans_AA.csv.xz
inst/extdata/evdevH2O/JWN+21/pfam_plant_nontrans_AA.csv.xz
inst/extdata/evdevH2O/JWN+21/pfam_plant_trans_AA.csv.xz
inst/extdata/evdevH2O/LMM16/mkaa.R
inst/extdata/evdevH2O/LMM16/modeAges_aa.csv
inst/extdata/evdevH2O/LMM16/modeAges_names.csv
inst/extdata/evdevH2O/LMM16/reference_proteomes.csv
inst/extdata/evdevH2O/MaximAct/LMM16_H2O_Hsa.csv
inst/extdata/evdevH2O/MaximAct/LMM16_O2_Hsa.csv
inst/extdata/evdevH2O/MaximAct/TPPG17_H2O_Bsu.csv
inst/extdata/evdevH2O/MaximAct/TPPG17_H2O_Dme.csv
inst/extdata/evdevH2O/MaximAct/TPPG17_H2O_Hsa.csv
inst/extdata/evdevH2O/MaximAct/TPPG17_O2_Bsu.csv
inst/extdata/evdevH2O/MaximAct/TPPG17_O2_Dme.csv
inst/extdata/evdevH2O/MaximAct/TPPG17_O2_Hsa.csv
inst/extdata/evdevH2O/MaximAct/fly_adult_H2O_Dme.csv
inst/extdata/evdevH2O/MaximAct/fly_adult_O2_Dme.csv
inst/extdata/evdevH2O/MaximAct/fly_development_H2O_Dme.csv
inst/extdata/evdevH2O/MaximAct/fly_development_O2_Dme.csv
inst/extdata/evdevH2O/MaximAct/fly_embryo_H2O_Dme.csv
inst/extdata/evdevH2O/MaximAct/fly_embryo_O2_Dme.csv
inst/extdata/evdevH2O/MaximAct/proteome_H2O_Bsu.csv
inst/extdata/evdevH2O/MaximAct/proteome_O2_Bsu.csv
inst/extdata/evdevH2O/MaximAct/runall.sh
inst/extdata/evdevH2O/MaximAct/transcriptome_H2O_Bsu.csv
inst/extdata/evdevH2O/MaximAct/transcriptome_O2_Bsu.csv
inst/extdata/evdevH2O/devodata/CBS+17.R
inst/extdata/evdevH2O/devodata/CBS+17_aa.csv.xz
inst/extdata/evdevH2O/devodata/CBS+17_abundance.csv.xz
inst/extdata/evdevH2O/devodata/CBS+17_mean_aa.csv
inst/extdata/evdevH2O/devodata/FOK+21.R
inst/extdata/evdevH2O/devodata/FOK+21_aa.csv.xz
inst/extdata/evdevH2O/devodata/FOK+21_abundance.csv.xz
inst/extdata/evdevH2O/devodata/FOK+21_mean_aa.csv
inst/extdata/evdevH2O/phylostrata/LMM16.csv.xz
inst/extdata/evdevH2O/phylostrata/TPPG17.csv.xz
inst/extdata/genoGOE/GMKK20/nitrogenase_aa.csv
inst/extdata/genoGOE/GTDB/ar53_msa_marker_info_r220_XHZ+06.csv
inst/extdata/genoGOE/GTDB/methanogen_genomes.csv
inst/extdata/genoGOE/GTDB/process_GTDB.R
inst/extdata/genoGOE/MCK+23/genome_aa.csv
inst/extdata/genoGOE/MCK+23/genomes.csv
inst/extdata/genoGOE/MCK+23/get_genomes.R
inst/extdata/genoGOE/MCK+23/sulfur_genomes.xlsx
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000007185.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000007345.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000008645.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000011005.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000012545.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000013445.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000013725.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000014945.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000015825.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000016125.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000016525.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000017165.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000017185.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000017625.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000021965.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000023985.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000024185.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000024625.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000025525.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000025865.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000063445.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000091665.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000092305.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000145295.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000147875.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000166095.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000179575.2_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000196655.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000217995.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000243255.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000251105.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000275865.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000328665.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000970025.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_000970205.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_002945325.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_017875395.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/aa/RS_GCF_024807035.1_aa.csv.xz
inst/extdata/genoGOE/methanogen/marker/faa/PF00410.20.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/PF00466.21.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/PF00687.22.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/PF00827.18.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/PF00900.21.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/PF01000.27.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/PF01015.19.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/PF01090.20.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/PF01200.19.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/PF01280.21.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/PF04919.13.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/PF07541.13.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00037.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00064.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00111.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00134.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00279.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00291.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00323.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00335.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00373.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00405.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00448.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00483.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00491.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00522.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00967.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR00982.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR01008.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR01012.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR01018.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR01020.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR01028.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR01046.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR01052.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR01171.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR01213.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR01952.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR02236.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR02338.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR02389.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR02390.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR03626.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR03627.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR03628.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR03629.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR03670.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR03671.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR03672.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR03673.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR03674.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR03676.faa.xz
inst/extdata/genoGOE/methanogen/marker/faa/TIGR03680.faa.xz
inst/extdata/genoGOE/methanogen/marker/fna/PF00410.20.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/PF00466.21.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/PF00687.22.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/PF00827.18.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/PF00900.21.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/PF01000.27.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/PF01015.19.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/PF01090.20.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/PF01200.19.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/PF01280.21.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/PF04919.13.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/PF07541.13.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00037.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00064.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00111.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00134.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00279.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00291.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00323.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00335.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00373.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00405.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00448.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00483.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00491.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00522.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00967.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR00982.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR01008.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR01012.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR01018.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR01020.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR01028.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR01046.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR01052.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR01171.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR01213.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR01952.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR02236.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR02338.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR02389.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR02390.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR03626.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR03627.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR03628.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR03629.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR03670.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR03671.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR03672.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR03673.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR03674.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR03676.fna.xz
inst/extdata/genoGOE/methanogen/marker/fna/TIGR03680.fna.xz
inst/extdata/geo16S/ARAST/Black_Sea_AA.csv
inst/extdata/geo16S/ARAST/Guts_AA.csv
inst/extdata/geo16S/ARAST/HMP_AA.csv
inst/extdata/geo16S/ARAST/Manus_Basin_AA.csv
inst/extdata/geo16S/ARAST/Marcellus_Shale_AA.csv
inst/extdata/geo16S/ARAST/Soils_AA.csv
inst/extdata/geo16S/ARAST/scripts/ARAST.R
inst/extdata/geo16S/ARAST/scripts/arast_sortme_rna.pl
inst/extdata/geo16S/ARAST/scripts/runARAST.R
inst/extdata/geo16S/ARAST/scripts/sort_helper.sh
inst/extdata/geo16S/AWDM15.csv
inst/extdata/geo16S/RDP/BCA+21.tab.xz
inst/extdata/geo16S/RDP/BGPF13.tab.xz
inst/extdata/geo16S/RDP/CHM+14.tab.xz
inst/extdata/geo16S/RDP/EH18.tab.xz
inst/extdata/geo16S/RDP/FLA+12.tab.xz
inst/extdata/geo16S/RDP/GBL+15.tab.xz
inst/extdata/geo16S/RDP/HCW+13.tab.xz
inst/extdata/geo16S/RDP/HLA+16.tab.xz
inst/extdata/geo16S/RDP/HMP12.tab.xz
inst/extdata/geo16S/RDP/HRR+18.tab.xz
inst/extdata/geo16S/RDP/HXZ+20.tab.xz
inst/extdata/geo16S/RDP/JHM+16.tab.xz
inst/extdata/geo16S/RDP/MKK+11.tab.xz
inst/extdata/geo16S/RDP/MMA+20.tab.xz
inst/extdata/geo16S/RDP/MPB+17.tab.xz
inst/extdata/geo16S/RDP/MZG+20.tab.xz
inst/extdata/geo16S/RDP/SMS+12.tab.xz
inst/extdata/geo16S/RDP/SVH+19.tab.xz
inst/extdata/geo16S/RDP/UKD+18.sediment.tab.xz
inst/extdata/geo16S/RDP/UKD+18.water.tab.xz
inst/extdata/geo16S/RDP/XDZ+17.tab.xz
inst/extdata/geo16S/RDP/ZLF+19.tab.xz
inst/extdata/geo16S/RDP/ZLM+16.tab.xz
inst/extdata/geo16S/metadata/BCA+21.csv
inst/extdata/geo16S/metadata/BGPF13.csv
inst/extdata/geo16S/metadata/CHM+14.csv
inst/extdata/geo16S/metadata/EH18.csv
inst/extdata/geo16S/metadata/FLA+12.csv
inst/extdata/geo16S/metadata/GBL+15.csv
inst/extdata/geo16S/metadata/HCW+13.csv
inst/extdata/geo16S/metadata/HLA+16.csv
inst/extdata/geo16S/metadata/HMP12.csv
inst/extdata/geo16S/metadata/HRR+18.csv
inst/extdata/geo16S/metadata/HXZ+20.csv
inst/extdata/geo16S/metadata/JHM+16.csv
inst/extdata/geo16S/metadata/MKK+11.csv
inst/extdata/geo16S/metadata/MMA+20.csv
inst/extdata/geo16S/metadata/MPB+17.csv
inst/extdata/geo16S/metadata/MZG+20.csv
inst/extdata/geo16S/metadata/SMS+12.csv
inst/extdata/geo16S/metadata/SVH+19.csv
inst/extdata/geo16S/metadata/UKD+18.sediment.csv
inst/extdata/geo16S/metadata/UKD+18.water.csv
inst/extdata/geo16S/metadata/XDZ+17.csv
inst/extdata/geo16S/metadata/ZLF+19.csv
inst/extdata/geo16S/metadata/ZLM+16.csv
inst/extdata/geo16S/pipeline.R
inst/extdata/geo16S/taxonomy/RDPgenera.txt
inst/extdata/geo16S/taxonomy/RDPphyla.txt
inst/extdata/geo16S/taxonomy/SILVAgenera.txt
inst/extdata/geo16S/taxonomy/SILVAphyla.txt
inst/extdata/geo16S/taxonomy/process.R
inst/extdata/gradH2O/AAbasis.R
inst/extdata/gradH2O/AAbasis.csv
inst/extdata/gradH2O/MGP.rds
inst/extdata/gradH2O/PCF+18_SuppTable1A.csv
inst/extdata/gradH2O/Table_S1.xlsx
inst/extdata/gradH2O/Table_S2.xlsx
inst/extdata/gradH2O/mkrds.R
inst/extdata/gradH2O/reaction_equations.csv
inst/extdata/gradox/AA_codon.csv
inst/extdata/gradox/MGD.rds
inst/extdata/gradox/MGP.rds
inst/extdata/gradox/MGR.rds
inst/extdata/gradox/Table_S1.csv
inst/extdata/gradox/Tables_S1-S2.xlsx
inst/extdata/gradox/mkrds.R
inst/extdata/gradox/one_percent/Diffuse_Vents_SRA_MG.csv
inst/extdata/gradox/one_percent/ETNP_OMZ_SRA_MG.csv
inst/extdata/gradox/one_percent/ETSP_OMZ_SRA_MG.csv
inst/extdata/gradox/one_percent/HOT_ALOHA-2010_SRA_MG.csv
inst/extdata/gradox/one_percent/Menez_Gwen_SRA_MG.csv
inst/extdata/microhum/16S/RDP-GTDB/AAM+20.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/AHM+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/ASM+23.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/BKK+17.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/BPB+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/CGC+22.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/CSC+22.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/DKK+23.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/FBD+22.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/GBS+22.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/GCP+23.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/GCW+20.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/GKD+14.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/GKJ+22.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/GWL+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/HBL+17.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/HMA+22.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/HMH+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/HMP12.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/IZC+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/KMG+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/LAA+19.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/LZD+19.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/MAC+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/MDV+22.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/MIK+22.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/MLL+16.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/MLW+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/NGH+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/PMM+22.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/PYL+23.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/RAF+20.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/RDM+22.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/REP+23.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/RFH+22.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/RWC+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/SGC+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/SRK+22.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/SRS+22.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/VCV+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/WCJ+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/WGL+19.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/WZL+23.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/XLZ+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/ZTG+21.tab.xz
inst/extdata/microhum/16S/RDP-GTDB/ZZZ+21.tab.xz
inst/extdata/microhum/16S/dataset_metrics_aerotolerant.csv
inst/extdata/microhum/16S/dataset_metrics_all.csv
inst/extdata/microhum/16S/dataset_metrics_anaerobe.csv
inst/extdata/microhum/16S/dataset_metrics_unknown.csv
inst/extdata/microhum/16S/metadata/AAM+20.csv
inst/extdata/microhum/16S/metadata/AHM+21.csv
inst/extdata/microhum/16S/metadata/ASM+23.csv
inst/extdata/microhum/16S/metadata/BKK+17.csv
inst/extdata/microhum/16S/metadata/BPB+21.csv
inst/extdata/microhum/16S/metadata/CGC+22.csv
inst/extdata/microhum/16S/metadata/CSC+22.csv
inst/extdata/microhum/16S/metadata/DKK+23.csv
inst/extdata/microhum/16S/metadata/FBD+22.csv
inst/extdata/microhum/16S/metadata/GBS+22.csv
inst/extdata/microhum/16S/metadata/GCP+23.csv
inst/extdata/microhum/16S/metadata/GCW+20.csv
inst/extdata/microhum/16S/metadata/GKD+14.csv
inst/extdata/microhum/16S/metadata/GKJ+22.csv
inst/extdata/microhum/16S/metadata/GWL+21.csv
inst/extdata/microhum/16S/metadata/HBL+17.csv
inst/extdata/microhum/16S/metadata/HMA+22.csv
inst/extdata/microhum/16S/metadata/HMH+21.csv
inst/extdata/microhum/16S/metadata/HMP12.csv
inst/extdata/microhum/16S/metadata/IZC+21.csv
inst/extdata/microhum/16S/metadata/KMG+21.csv
inst/extdata/microhum/16S/metadata/LAA+19.csv
inst/extdata/microhum/16S/metadata/LZD+19.csv
inst/extdata/microhum/16S/metadata/MAC+21.csv
inst/extdata/microhum/16S/metadata/MDV+22.csv
inst/extdata/microhum/16S/metadata/MIK+22.csv
inst/extdata/microhum/16S/metadata/MLL+16.csv
inst/extdata/microhum/16S/metadata/MLW+21.csv
inst/extdata/microhum/16S/metadata/NGH+21.csv
inst/extdata/microhum/16S/metadata/PMM+22.csv
inst/extdata/microhum/16S/metadata/PYL+23.csv
inst/extdata/microhum/16S/metadata/RAF+20.csv
inst/extdata/microhum/16S/metadata/RDM+22.csv
inst/extdata/microhum/16S/metadata/REP+23.csv
inst/extdata/microhum/16S/metadata/RFH+22.csv
inst/extdata/microhum/16S/metadata/RWC+21.csv
inst/extdata/microhum/16S/metadata/SGC+21.csv
inst/extdata/microhum/16S/metadata/SRK+22.csv
inst/extdata/microhum/16S/metadata/SRS+22.csv
inst/extdata/microhum/16S/metadata/VCV+21.csv
inst/extdata/microhum/16S/metadata/WCJ+21.csv
inst/extdata/microhum/16S/metadata/WGL+19.csv
inst/extdata/microhum/16S/metadata/WZL+23.csv
inst/extdata/microhum/16S/metadata/XLZ+21.csv
inst/extdata/microhum/16S/metadata/ZTG+21.csv
inst/extdata/microhum/16S/metadata/ZZZ+21.csv
inst/extdata/microhum/16S/pipeline.R
inst/extdata/microhum/ARAST/ARAST.R
inst/extdata/microhum/ARAST/CZH+22_aa.csv
inst/extdata/microhum/ARAST/CZH+22_stats.csv
inst/extdata/microhum/ARAST/HMP12_aa.csv
inst/extdata/microhum/ARAST/HMP12_no_screening_aa.csv
inst/extdata/microhum/ARAST/HMP12_no_screening_stats.csv
inst/extdata/microhum/ARAST/HMP12_stats.csv
inst/extdata/microhum/ARAST/LAA+19_aa.csv
inst/extdata/microhum/ARAST/LAA+19_stats.csv
inst/extdata/microhum/ARAST/LLZ+21_aa.csv
inst/extdata/microhum/ARAST/LLZ+21_stats.csv
inst/extdata/microhum/ARAST/ZZL+20_aa.csv
inst/extdata/microhum/ARAST/ZZL+20_stats.csv
inst/extdata/microhum/ARAST/arast_sortme_rna.pl
inst/extdata/microhum/ARAST/runARAST.R
inst/extdata/microhum/ARAST/sort_helper.sh
inst/extdata/microhum/Figure_5_genera.txt
inst/extdata/microhum/KWL22/BioSample_metadata.csv
inst/extdata/microhum/KWL22/KWL22_MAGs_prodigal_aa.csv.xz
inst/extdata/microhum/KWL22/mkaa.R
inst/extdata/microhum/MR18_Table_S1_modified.csv
inst/extdata/microhum/SI/Table_S1.xlsx
inst/extdata/microhum/SI/Table_S2.xlsx
inst/extdata/microhum/metaproteome/GNT+21/GNT+21_cells_aa.csv
inst/extdata/microhum/metaproteome/GNT+21/GNT+21_supernatant_aa.csv
inst/extdata/microhum/metaproteome/GNT+21/NOTES
inst/extdata/microhum/metaproteome/GNT+21/download_HOMD.R
inst/extdata/microhum/metaproteome/GNT+21/mkaa.R
inst/extdata/microhum/metaproteome/GPM+22/GPM+22_aa.csv
inst/extdata/microhum/metaproteome/GPM+22/GPM+22_bacteria_aa.csv
inst/extdata/microhum/metaproteome/GPM+22/NOTES
inst/extdata/microhum/metaproteome/GPM+22/download.R
inst/extdata/microhum/metaproteome/GPM+22/mkaa.R
inst/extdata/microhum/metaproteome/HZX+21/HZX+21_aa.csv
inst/extdata/microhum/metaproteome/HZX+21/HZX+21_bacteria_aa.csv
inst/extdata/microhum/metaproteome/HZX+21/NOTES
inst/extdata/microhum/metaproteome/HZX+21/mkaa.R
inst/extdata/microhum/metaproteome/HZX+21/uniprot.tsv.xz
inst/extdata/microhum/metaproteome/HZX+21/uniprotIDs.txt
inst/extdata/microhum/metaproteome/JZW+22/JZW+22_aa.csv
inst/extdata/microhum/metaproteome/JZW+22/download_HOMD.R
inst/extdata/microhum/metaproteome/JZW+22/mkaa.R
inst/extdata/microhum/metaproteome/MLL+17/MLL+17_aa.csv
inst/extdata/microhum/metaproteome/MLL+17/mkaa.R
inst/extdata/microhum/metaproteome/MLL+17/uniparc.tsv.xz
inst/extdata/microhum/metaproteome/MLL+17/unique_IDs.txt
inst/extdata/microhum/metaproteome/TWC+22/H1_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/H2_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/H3_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/H4_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/H5_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/H6_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/H7_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/H8_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/NOTES
inst/extdata/microhum/metaproteome/TWC+22/TWC+22_aa.csv
inst/extdata/microhum/metaproteome/TWC+22/UC11_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/UC15_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/UC1_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/UC23F_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/UC2_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/UC4_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/UC5_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/UC6_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/UC8_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/UC9_uniprotID.txt.xz
inst/extdata/microhum/metaproteome/TWC+22/mkaa.R
inst/extdata/microhum/metaproteome/TWC+22/uniqueIDs.txt
inst/extdata/misc/bluered1000.txt
inst/extdata/misc/bluered2000.txt
inst/extdata/mjenergy/SC10_Endeavour.csv
inst/extdata/mjenergy/SC10_Rainbow.csv
inst/extdata/orp16S/BKM60.csv
inst/extdata/orp16S/Dataset_S3.csv
inst/extdata/orp16S/EZdat.csv
inst/extdata/orp16S/EZlm.csv
inst/extdata/orp16S/MR18_Table_S1.csv
inst/extdata/orp16S/RDP-GTDB/APV+20.tab.xz
inst/extdata/orp16S/RDP-GTDB/BCA+21.tab.xz
inst/extdata/orp16S/RDP-GTDB/BMOB18.tab.xz
inst/extdata/orp16S/RDP-GTDB/BSPD17.tab.xz
inst/extdata/orp16S/RDP-GTDB/BWD+19.tab.xz
inst/extdata/orp16S/RDP-GTDB/CKB+22.tab.xz
inst/extdata/orp16S/RDP-GTDB/CLS+19.tab.xz
inst/extdata/orp16S/RDP-GTDB/CLZ+22.tab.xz
inst/extdata/orp16S/RDP-GTDB/CTS+17.tab.xz
inst/extdata/orp16S/RDP-GTDB/CWC+20.tab.xz
inst/extdata/orp16S/RDP-GTDB/DJK+18.tab.xz
inst/extdata/orp16S/RDP-GTDB/DLS21.tab.xz
inst/extdata/orp16S/RDP-GTDB/DTJ+20.tab.xz
inst/extdata/orp16S/RDP-GTDB/GSBT20.tab.xz
inst/extdata/orp16S/RDP-GTDB/GWS+20.tab.xz
inst/extdata/orp16S/RDP-GTDB/GZL21.tab.xz
inst/extdata/orp16S/RDP-GTDB/HCW+22.tab.xz
inst/extdata/orp16S/RDP-GTDB/HDZ+19.tab.xz
inst/extdata/orp16S/RDP-GTDB/HLZ+18.tab.xz
inst/extdata/orp16S/RDP-GTDB/HSF+19.tab.xz
inst/extdata/orp16S/RDP-GTDB/HSF+22.tab.xz
inst/extdata/orp16S/RDP-GTDB/HTZ+17.tab.xz
inst/extdata/orp16S/RDP-GTDB/HXZ+20.tab.xz
inst/extdata/orp16S/RDP-GTDB/IBK+22.tab.xz
inst/extdata/orp16S/RDP-GTDB/KLM+16.tab.xz
inst/extdata/orp16S/RDP-GTDB/KSR+21.tab.xz
inst/extdata/orp16S/RDP-GTDB/KTS+17.mock.tab.xz
inst/extdata/orp16S/RDP-GTDB/KTS+17.tab.xz
inst/extdata/orp16S/RDP-GTDB/LJC+20.tab.xz
inst/extdata/orp16S/RDP-GTDB/LLC+19.tab.xz
inst/extdata/orp16S/RDP-GTDB/LMBA21.tab.xz
inst/extdata/orp16S/RDP-GTDB/LWJ+21.tab.xz
inst/extdata/orp16S/RDP-GTDB/MCR+22.tab.xz
inst/extdata/orp16S/RDP-GTDB/MGW+22.tab.xz
inst/extdata/orp16S/RDP-GTDB/MLL+18.tab.xz
inst/extdata/orp16S/RDP-GTDB/MLL+19.tab.xz
inst/extdata/orp16S/RDP-GTDB/MPB+19.tab.xz
inst/extdata/orp16S/RDP-GTDB/MTC21.tab.xz
inst/extdata/orp16S/RDP-GTDB/MWY+21.tab.xz
inst/extdata/orp16S/RDP-GTDB/NLE+21.tab.xz
inst/extdata/orp16S/RDP-GTDB/NTB+21.tab.xz
inst/extdata/orp16S/RDP-GTDB/OHL+18.tab.xz
inst/extdata/orp16S/RDP-GTDB/PBU+20.tab.xz
inst/extdata/orp16S/RDP-GTDB/PCL+18.tab.xz
inst/extdata/orp16S/RDP-GTDB/PSB+21.tab.xz
inst/extdata/orp16S/RDP-GTDB/PSG+20.tab.xz
inst/extdata/orp16S/RDP-GTDB/RARG22.tab.xz
inst/extdata/orp16S/RDP-GTDB/RBW+14.tab.xz
inst/extdata/orp16S/RDP-GTDB/RKN+17.tab.xz
inst/extdata/orp16S/RDP-GTDB/RKSK22.tab.xz
inst/extdata/orp16S/RDP-GTDB/RMB+17.tab.xz
inst/extdata/orp16S/RDP-GTDB/RSS+18.tab.xz
inst/extdata/orp16S/RDP-GTDB/RYP+14.tab.xz
inst/extdata/orp16S/RDP-GTDB/SAR+13.tab.xz
inst/extdata/orp16S/RDP-GTDB/SBP+20.tab.xz
inst/extdata/orp16S/RDP-GTDB/SPA+21.tab.xz
inst/extdata/orp16S/RDP-GTDB/SRM+19.tab.xz
inst/extdata/orp16S/RDP-GTDB/WFB+21.tab.xz
inst/extdata/orp16S/RDP-GTDB/WHL+21.tab.xz
inst/extdata/orp16S/RDP-GTDB/WHLH21.tab.xz
inst/extdata/orp16S/RDP-GTDB/WHLH21a.tab.xz
inst/extdata/orp16S/RDP-GTDB/WKG+22.tab.xz
inst/extdata/orp16S/RDP-GTDB/WKP+22.tab.xz
inst/extdata/orp16S/RDP-GTDB/WLJ+16.tab.xz
inst/extdata/orp16S/RDP-GTDB/YHK+20.tab.xz
inst/extdata/orp16S/RDP-GTDB/ZCZ+21.tab.xz
inst/extdata/orp16S/RDP-GTDB/ZDW+19.tab.xz
inst/extdata/orp16S/RDP-GTDB/ZHZ+19.tab.xz
inst/extdata/orp16S/RDP-GTDB/ZLH+22.tab.xz
inst/extdata/orp16S/RDP-GTDB/ZML+17.tab.xz
inst/extdata/orp16S/RDP-GTDB/ZZL+21.tab.xz
inst/extdata/orp16S/RDP-GTDB/ZZLL21.tab.xz
inst/extdata/orp16S/hydro_p/hydro_p_LakeErie.cpg
inst/extdata/orp16S/hydro_p/hydro_p_LakeErie.dbf
inst/extdata/orp16S/hydro_p/hydro_p_LakeErie.prj
inst/extdata/orp16S/hydro_p/hydro_p_LakeErie.sbn
inst/extdata/orp16S/hydro_p/hydro_p_LakeErie.sbx
inst/extdata/orp16S/hydro_p/hydro_p_LakeErie.shp
inst/extdata/orp16S/hydro_p/hydro_p_LakeErie.shx
inst/extdata/orp16S/hydro_p/hydro_p_LakeHuron.cpg
inst/extdata/orp16S/hydro_p/hydro_p_LakeHuron.dbf
inst/extdata/orp16S/hydro_p/hydro_p_LakeHuron.prj
inst/extdata/orp16S/hydro_p/hydro_p_LakeHuron.sbn
inst/extdata/orp16S/hydro_p/hydro_p_LakeHuron.sbx
inst/extdata/orp16S/hydro_p/hydro_p_LakeHuron.shp
inst/extdata/orp16S/hydro_p/hydro_p_LakeHuron.shx
inst/extdata/orp16S/hydro_p/hydro_p_LakeMichigan.cpg
inst/extdata/orp16S/hydro_p/hydro_p_LakeMichigan.dbf
inst/extdata/orp16S/hydro_p/hydro_p_LakeMichigan.prj
inst/extdata/orp16S/hydro_p/hydro_p_LakeMichigan.sbn
inst/extdata/orp16S/hydro_p/hydro_p_LakeMichigan.sbx
inst/extdata/orp16S/hydro_p/hydro_p_LakeMichigan.shp
inst/extdata/orp16S/hydro_p/hydro_p_LakeMichigan.shx
inst/extdata/orp16S/hydro_p/hydro_p_LakeOntario.cpg
inst/extdata/orp16S/hydro_p/hydro_p_LakeOntario.dbf
inst/extdata/orp16S/hydro_p/hydro_p_LakeOntario.prj
inst/extdata/orp16S/hydro_p/hydro_p_LakeOntario.sbn
inst/extdata/orp16S/hydro_p/hydro_p_LakeOntario.sbx
inst/extdata/orp16S/hydro_p/hydro_p_LakeOntario.shp
inst/extdata/orp16S/hydro_p/hydro_p_LakeOntario.shx
inst/extdata/orp16S/hydro_p/hydro_p_LakeStClair.cpg
inst/extdata/orp16S/hydro_p/hydro_p_LakeStClair.dbf
inst/extdata/orp16S/hydro_p/hydro_p_LakeStClair.prj
inst/extdata/orp16S/hydro_p/hydro_p_LakeStClair.sbn
inst/extdata/orp16S/hydro_p/hydro_p_LakeStClair.sbx
inst/extdata/orp16S/hydro_p/hydro_p_LakeStClair.shp
inst/extdata/orp16S/hydro_p/hydro_p_LakeStClair.shx
inst/extdata/orp16S/hydro_p/hydro_p_LakeSuperior.cpg
inst/extdata/orp16S/hydro_p/hydro_p_LakeSuperior.dbf
inst/extdata/orp16S/hydro_p/hydro_p_LakeSuperior.prj
inst/extdata/orp16S/hydro_p/hydro_p_LakeSuperior.sbn
inst/extdata/orp16S/hydro_p/hydro_p_LakeSuperior.sbx
inst/extdata/orp16S/hydro_p/hydro_p_LakeSuperior.shp
inst/extdata/orp16S/hydro_p/hydro_p_LakeSuperior.shx
inst/extdata/orp16S/metadata/APV+20.csv
inst/extdata/orp16S/metadata/BCA+21.csv
inst/extdata/orp16S/metadata/BMOB18.csv
inst/extdata/orp16S/metadata/BSPD17.csv
inst/extdata/orp16S/metadata/BWD+19.csv
inst/extdata/orp16S/metadata/CKB+22.csv
inst/extdata/orp16S/metadata/CLS+19.csv
inst/extdata/orp16S/metadata/CLZ+22.csv
inst/extdata/orp16S/metadata/CTS+17.csv
inst/extdata/orp16S/metadata/CWC+20.csv
inst/extdata/orp16S/metadata/DJK+18.csv
inst/extdata/orp16S/metadata/DLS21.csv
inst/extdata/orp16S/metadata/DTJ+20.csv
inst/extdata/orp16S/metadata/GSBT20.csv
inst/extdata/orp16S/metadata/GWS+20.csv
inst/extdata/orp16S/metadata/GZL21.csv
inst/extdata/orp16S/metadata/HCW+22.csv
inst/extdata/orp16S/metadata/HDZ+19.csv
inst/extdata/orp16S/metadata/HLZ+18.csv
inst/extdata/orp16S/metadata/HSF+19.csv
inst/extdata/orp16S/metadata/HSF+22.csv
inst/extdata/orp16S/metadata/HTZ+17.csv
inst/extdata/orp16S/metadata/HXZ+20.csv
inst/extdata/orp16S/metadata/IBK+22.csv
inst/extdata/orp16S/metadata/KLM+16.csv
inst/extdata/orp16S/metadata/KSR+21.csv
inst/extdata/orp16S/metadata/KTS+17.csv
inst/extdata/orp16S/metadata/KTS+17.mock.csv
inst/extdata/orp16S/metadata/LJC+20.csv
inst/extdata/orp16S/metadata/LLC+19.csv
inst/extdata/orp16S/metadata/LMBA21.csv
inst/extdata/orp16S/metadata/LWJ+21.csv
inst/extdata/orp16S/metadata/MCR+22.csv
inst/extdata/orp16S/metadata/MGW+22.csv
inst/extdata/orp16S/metadata/MLL+18.csv
inst/extdata/orp16S/metadata/MLL+19.csv
inst/extdata/orp16S/metadata/MPB+19.csv
inst/extdata/orp16S/metadata/MTC21.csv
inst/extdata/orp16S/metadata/MWY+21.csv
inst/extdata/orp16S/metadata/NLE+21.csv
inst/extdata/orp16S/metadata/NTB+21.csv
inst/extdata/orp16S/metadata/OHL+18.csv
inst/extdata/orp16S/metadata/PBU+20.csv
inst/extdata/orp16S/metadata/PCL+18.csv
inst/extdata/orp16S/metadata/PSB+21.csv
inst/extdata/orp16S/metadata/PSG+20.csv
inst/extdata/orp16S/metadata/RARG22.csv
inst/extdata/orp16S/metadata/RBW+14.csv
inst/extdata/orp16S/metadata/RKN+17.csv
inst/extdata/orp16S/metadata/RKSK22.csv
inst/extdata/orp16S/metadata/RMB+17.csv
inst/extdata/orp16S/metadata/RSS+18.csv
inst/extdata/orp16S/metadata/RYP+14.csv
inst/extdata/orp16S/metadata/SAR+13.csv
inst/extdata/orp16S/metadata/SBP+20.csv
inst/extdata/orp16S/metadata/SPA+21.csv
inst/extdata/orp16S/metadata/SRM+19.csv
inst/extdata/orp16S/metadata/WFB+21.csv
inst/extdata/orp16S/metadata/WHL+21.csv
inst/extdata/orp16S/metadata/WHLH21.csv
inst/extdata/orp16S/metadata/WHLH21a.csv
inst/extdata/orp16S/metadata/WKG+22.csv
inst/extdata/orp16S/metadata/WKP+22.csv
inst/extdata/orp16S/metadata/WLJ+16.csv
inst/extdata/orp16S/metadata/YHK+20.csv
inst/extdata/orp16S/metadata/ZCZ+21.csv
inst/extdata/orp16S/metadata/ZDW+19.csv
inst/extdata/orp16S/metadata/ZHZ+19.csv
inst/extdata/orp16S/metadata/ZLH+22.csv
inst/extdata/orp16S/metadata/ZML+17.csv
inst/extdata/orp16S/metadata/ZZL+21.csv
inst/extdata/orp16S/metadata/ZZLL21.csv
inst/extdata/orp16S/metaproteome/HTZ+17/HTZ+17_TableS2_selected.csv
inst/extdata/orp16S/metaproteome/HTZ+17/HTZ+17_aa.csv
inst/extdata/orp16S/metaproteome/HTZ+17/mkaa.R
inst/extdata/orp16S/metaproteome/KTS+17.mock/KTS+17.mock_aa.csv
inst/extdata/orp16S/metaproteome/KTS+17.mock/mkaa.R
inst/extdata/orp16S/metaproteome/KTS+17/KTS+17_aa.csv
inst/extdata/orp16S/metaproteome/KTS+17/mkaa.R
inst/extdata/orp16S/metaproteome/MPB+19/MPB+19_aa.csv
inst/extdata/orp16S/metaproteome/MPB+19/mkaa.R
inst/extdata/orp16S/metaproteome/PMM+18/PMM+18_aa.csv
inst/extdata/orp16S/metaproteome/PMM+18/mkaa.R
inst/extdata/orp16S/pipeline.R
inst/extdata/subsurface/data/MGP/North_Pond_SRA_MGP_CTD.csv
inst/extdata/subsurface/data/MGP/North_Pond_SRA_MGP_TP1.csv
inst/extdata/subsurface/data/MGP/North_Pond_SRA_MGP_TP2.csv
inst/extdata/subsurface/data/MGP/North_Pond_SRA_MGP_TP3.csv
inst/extdata/subsurface/data/MGP/North_Pond_SRA_MGP_TP4.csv
inst/extdata/subsurface/data/MGP/North_Pond_SRA_MGP_TP5.csv
inst/extdata/subsurface/data/MGP/North_Pond_SRA_MGP_TP6.csv
inst/extdata/subsurface/data/MGP/North_Pond_SRA_MGP_TP7.csv
inst/extdata/subsurface/data/MGP/North_Pond_SRA_MGP_TP8.csv
inst/extdata/subsurface/data/MGP/North_Pond_SRA_MGP_TP9.csv
inst/extdata/subsurface/data/MGP/Peru_Margin_SRA_MTP_159m.csv
inst/extdata/subsurface/data/MGP/Peru_Margin_SRA_MTP_30m.csv
inst/extdata/subsurface/data/MGP/Peru_Margin_SRA_MTP_50m.csv
inst/extdata/subsurface/data/MGP/Peru_Margin_SRA_MTP_5m.csv
inst/extdata/subsurface/data/MGP/Peru_Margin_SRA_MTP_70m.csv
inst/extdata/subsurface/data/MGP/Peru_Margin_SRA_MTP_91m.csv
inst/extdata/utogig/H2_intermediate_-3.csv
inst/extdata/utogig/H2_intermediate_-6.csv
inst/extdata/utogig/H2_intermediate_Acid_-3.csv
inst/extdata/utogig/H2_intermediate_Aminoacid_-3.csv
inst/extdata/utogig/H2_intermediate_C1andC2_-3.csv
inst/extdata/utogig/H2_intermediate_Nucleobase_-3.csv
inst/extdata/utogig/H2_intermediate_Sugar_-3.csv
inst/extdata/utogig/H2_intermediate_TCAcycle_-3.csv
inst/extdata/utogig/LG88_Fig1.csv
inst/extdata/utogig/Nif_homolog_AA.csv
inst/extdata/utogig/Nif_homolog_genomes.R
inst/extdata/utogig/Nif_homolog_genomes.csv
inst/extdata/utogig/Thaumarchaeota_database_AA.csv
inst/extdata/utogig/Thaumarchaeota_predicted_AA.csv
inst/extdata/utogig/Topt.csv
inst/extdata/utogig/methanogen_AA.csv
inst/extdata/utogig/methanogen_tree.txt
man/JMDplots-package.Rd
man/MaximAct.Rd
man/PS.Rd
man/aaaq.Rd
man/aoscp.Rd
man/bison.Rd
man/canH2O.Rd
man/carrollite.Rd
man/chem16S.Rd
man/chnosz10.Rd
man/cpcp.Rd
man/devodata.Rd
man/diffexpr.Rd
man/dunnTest.Rd
man/evdevH2O.Rd
man/genoGOE.Rd
man/geo16S.Rd
man/gradH2O.Rd
man/grad_mplot.Rd
man/gradox.Rd
man/macros/macros.Rd
man/microhum.Rd
man/mjenergy.Rd
man/orp16S.Rd
man/orp16S_util.Rd
man/pdat_.Rd
man/plot_starburst.Rd
man/scsc.Rd
man/subsurface.Rd
man/utils.Rd
man/utogig.Rd
man/yeast.Rd
vignettes/.install_extras
vignettes/CHNOSZ.dia
vignettes/CHNOSZ_oldintro.Rmd
vignettes/CHNOSZ_rubisco.svg
vignettes/CHNOSZ_vig.bib
vignettes/JMDplots.bib
vignettes/aaaq.Rmd
vignettes/aoscp.Rmd
vignettes/bison.Rmd
vignettes/canH2O.Rmd
vignettes/carrollite.Rmd
vignettes/chem16S.Rmd
vignettes/chnosz10.Rmd
vignettes/chnosz10_SI.Rmd
vignettes/cpcp.Rmd
vignettes/elementa.csl
vignettes/evdevH2O.Rmd
vignettes/genoGOE.Rmd
vignettes/geo16S.Rmd
vignettes/gradH2O.Rmd
vignettes/gradox.Rmd
vignettes/microhum.Rmd
vignettes/mjenergy.Rmd
vignettes/mkdoc.R
vignettes/orp16S.Rmd
vignettes/orp16S.bib
vignettes/scsc.Rmd
vignettes/utogig.Rmd
