p1scoremat: All by all nblast score matrix for 143 traced P1 neurons

In jefferis/p1neurons: Dataset of Drosophila male-specific P1 neurons

Description

This all by all score matrix can be used for structure-based clustering of P1 neurons. The score matrix was calculated by nat.nblast::nblast_allbyall(p1dps). The nblast algorithm is described in detail in [1].

References

[1] NBLAST: Rapid, sensitive comparison of neuronal structure and construction of neuron family databases. Marta Costa, Aaron D. Ostrovsky, James D. Manton, Steffen Prohaska, Gregory S.X.E. Jefferis. bioRxiv doi: http://dx.doi.org/10.1101/006346.

See Also

nhclust, hclustfc

Examples

hc=hclustfc(names(p1dps))
plot(hc)
library(dendroextras)
hcc=colour_clusters(hc, k=2)
labels(hcc)=with(p1dps[labels(hcc)], sex)
plot(hcc)

jefferis/p1neurons documentation built on May 19, 2019, 3:06 a.m.