getCandidateFusions: Select candidate fusions by sample and gene

In jefferys/FusionExpressionPlot: Plot Expression Profiles for Fused Genes

Description

Select out the candidate fusions for the given samples as a new data. For each samples, include any fusion involving either gene. May not care about a specific sample-gene1-gene2 combo, but that is for something else to filter.

Usage

getCandidateFusions(fusionDF, sample, gene1, gene2)

Arguments

fusionDF	The data frame of fusion data
sample	The vector of sample names to filter by
gene1	The vector of gene names to filter by (either end)
gene2	Another vector of gene name to filter by (either end)

Value

The rows from the data frame matching any given sample and where both fusion gene ends are in the one of the two lists given (in any combination)

jefferys/FusionExpressionPlot documentation built on May 19, 2019, 3:59 a.m.