plotFusionExpressionOne: Plot a one-gene fusion expression plot.

Description Usage Arguments Value See Also

View source: R/fusionExpressionPlot.R

Description

This generates one fusion expression plot file showing the expression of one gene and associated (possibly multiple, possibly none) fusion points to non-gene regions For plotting two genes, see plotFusionExpressionPair. Essentially a wrapper around two low-level functions: getFusionExpressionPlotData which generates the plotting data given expression and fusion information, and plotFusionExpressionPlotData which handles the actual plot file creation.

Usage

1
plotFusionExpressionOne(geneName1, fusions1, sample, cohortExpressionDF)

Arguments

geneName1

The name of the gene being plotted.

fusions1

A vector of genomic fusion ends within the geneName1

sample

The sample name, for the plot and for lookup of expression in the cohortExpressionDF.

cohortExpressionDF

Provides the gene models for the specified gene and the normalized expression for the specified sample. See normExpressionData for format.

Value

Nothing

See Also

normExpressionData, plotFusionExpressionPlotData, getFusionExpressionPlotData, getCohortExonExpressionData plotFusionExpressionPair


jefferys/FusionExpressionPlot documentation built on May 19, 2019, 3:59 a.m.