jefferys/SamSeq: Work with aligned reads from a SAM file

Work with the aligned read data as provided in a *.sam file, as in the format used by SamTools. Tracks header information, reads, and the source file. Loads all reads and optionally the extra read tags. Includes functions to translate the Sam flags and to filter reads.

Getting started

Package details

AuthorStuart R. Jefferys
MaintainerStuart R. Jefferys <[email protected]>
LicenseMIT + file LICENSE
Version0.0.1-9000
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("jefferys/SamSeq")
jefferys/SamSeq documentation built on May 19, 2019, 3:59 a.m.