areTagsParsed: Are sam tags parsed

In jefferys/SamSeq: Work with aligned reads from a SAM file

Description

Accessors for checking if the data associated with this Sam file has parsed tags, or has one column with tags unparsed. Both reads and headers will have a parsed and an unparsed version, although currently only an unparsed version is avaialble for headers.

Usage

areReadTagsParsed(x, ...)

## S3 method for class 'SamReads'
areReadTagsParsed(x, ...)

## S3 method for class 'Sam'
areReadTagsParsed(x, ...)

areHeaderTagsParsed(x, ...)

## S3 method for class 'SamHeader'
areHeaderTagsParsed(x, ...)

## S3 method for class 'Sam'
areHeaderTagsParsed(x, ...)

Arguments

x	The Sam, SamReads or SamHeader object to check for parsed tags.
...	Required for S3 object method implementation. Not currently used.

Value

TRUE if tags are parsed, FALSE otherwise.

jefferys/SamSeq documentation built on Oct. 25, 2019, 8:11 a.m.