SamSeq: Work with aligned reads from a SAM file

Description

Description

Work with the aligned read data as provided in a *.sam file, as in the format used by SamTools. Tracks header information, reads, and the source file. Loads all reads and optionally the extra read tags. Includes functions to translate the Sam flags and to filter reads.


jefferys/SamSeq documentation built on Oct. 25, 2019, 8:11 a.m.