Files in jefferys/SamSeq
Work with aligned reads from a SAM file
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/Sam.R
R/SamExceptions.R
R/SamHeader.R
R/SamReads.R
R/SamSource.R
R/areParsed.R
R/package-SamSeq.R
R/samFilters.R
R/samFlags.R
R/tempFilters.R
README.Rmd
README.md
SamSeq.Rproj
inst/extdata/pe.sam
man/Sam.Rd
man/SamFileFormatException.Rd
man/SamHeader.Rd
man/SamReads.Rd
man/SamSeq.Rd
man/SamSource.Rd
man/areTagsParsed.Rd
man/countAllReads.Rd
man/pairedEndReadTests.Rd
man/pairedReads.Rd
man/parseSamHeaderLines.Rd
man/parseSamReadLines.Rd
man/parseSamReadTags.Rd
man/readTests.Rd
man/samFlags.Rd
man/samReadCount.Rd
man/samReadFilter.Rd
man/samReadMatch.Rd
man/samSourceHost.Rd
man/samSourceName.Rd
man/samSourceType.Rd
man/testSamFlags.Rd
tests/testthat.R
tests/testthat/badSamFiles/empty.sam
tests/testthat/goodSamFiles/pe.sam
tests/testthat/test_Sam.r
tests/testthat/test_SamExceptions.r
tests/testthat/test_SamHeader.r
tests/testthat/test_SamReads.r
tests/testthat/test_SamSource.r
tests/testthat/test_samFilters.r
tests/testthat/test_samFlags.r
vignettes/IntroToSamSeq.Rmd
