Man pages for jefferys/SamSeq
Work with aligned reads from a SAM file
| areTagsParsed | Are sam tags parsed |
| countAllReads | Read statistics |
| pairedEndReadTests | Paired-end read tests |
| pairedReads | Filter paired or unpaired reads |
| parseSamHeaderLines | Parse strings as sam file header lines |
| parseSamReadLines | Parse Sam file read lines |
| parseSamReadTags | Parse the optional sam read tags into a data frame |
| readTests | Read tests |
| Sam | Create a sam (sequence alignment/map) object. |
| SamFileFormatException | Sam format exceptions |
| samFlags | Work with the sam flags field |
| SamHeader | Return a SamHeader object |
| samReadCount | Count reads meeting filter criteria |
| samReadFilter | Filter a Sam object |
| samReadMatch | Identify reads matching an applied filter. |
| SamReads | Return a SamReads object |
| SamSeq | Work with aligned reads from a SAM file |
| SamSource | Create or retrieve 'SamSource' objects. |
| samSourceHost | SamSource host data accessor |
| samSourceName | SamSource name data accessor |
| samSourceType | SamSource data type accessor |
| testSamFlags | Test if sam flags are set or unset. |
